Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02231 ATGATCGTTGGCGCTATCGATATATATAATTTCTCCTCAGTTTACTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACTAACTTTCCGGTGTCCAACTACGAAAAAGAACTAGAGGATATGAAGAATATGACCAGACAAGAATTCGTAGCTTCGTTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGCTTCTATCTACAGAGGTGTAACTAGGCACCATCAACATGGCAGATGGCAAGCAAGAATCGGTAGGGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCAGCCGAGGCCTATGATATAGCAGCCATAAAATTCCGAGGGCTAAACGCGGTCACAAACTTCGACATTAGTCGTTACGACGTTAAAAGCATTGCTAGTAGCAACCTTCCCATAGGAGGGATGTCTGGCGCCAAATCCAAAACCACCTCTGATTCTGCTGCTTCCGATGGTGGCAGCCGATCGACCGACGAACGTGACGTCCACCATTCTCCTCCATCTTCAAGTACCTCAACTTTCATCTCCTCATCATCACAGCCAAACAACAACTCCTCGAGTACTCTAAGCTTCACAATGCCGATCAAACAAGACCCATCGGATCAATACTGGTCCATCCTCAGCTATAACCCCGATGCCTTCAATGCAAATCTCCCCAAACCCCACGATAATAATGTTCCACCATTGACGTCGTCATCAATGTTTCAACAACCTGAATCCACAATGTTTCCCGCCATCACGGAGCTAGGATCGAGCGGGTCCGGGATGACGGAAGGCGGGATGTATGTACAACAACAACAACAGTATGTAACGCCAATGGCATTTGCAAAAGCAAGTTTTTTTCAGACACCAATTTTTGGTATGGAATGA 939 46.01 MIVGAIDIYNFSSVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGAKSKTTSDSAASDGGSRSTDERDVHHSPPSSSTSTFISSSSQPNNNSSSTLSFTMPIKQDPSDQYWSILSYNPDAFNANLPKPHDNNVPPLTSSSMFQQPESTMFPAITELGSSGSGMTEGGMYVQQQQQYVTPMAFAKASFFQTPIFGME* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26384687 26386327 + Chy2G044980.1 Chy02g02231 221679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02231 312 MobiDBLite consensus disorder prediction 155 175 - -
Chy02g02231 312 CDD AP2 14 48 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 Gene3D AP2/ERF domain 7 48 IPR036955 GO:0003700|GO:0006355
Chy02g02231 312 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Chy02g02231 312 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 14 238 - -
Chy02g02231 312 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 238 - -
Chy02g02231 312 ProSiteProfiles AP2/ERF domain profile. 1 46 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 SMART rav1_2 4 52 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 SUPERFAMILY DNA-binding domain 81 142 IPR016177 GO:0003677
Chy02g02231 312 MobiDBLite consensus disorder prediction 155 216 - -
Chy02g02231 312 MobiDBLite consensus disorder prediction 189 216 - -
Chy02g02231 312 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Chy02g02231 312 SUPERFAMILY DNA-binding domain 10 48 IPR016177 GO:0003677
Chy02g02231 312 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02231 Chy-Chr2:26384687 Chy05g00712 Chy-Chr5:9314823 1.71E-12 dispersed
Chy02g02231 Chy-Chr2:26384687 Chy02g00817 Chy-Chr2:5154355 2.11E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17581 PF00847 AP2 1.70E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02231 K09285 - csv:101210453 502.671