Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02253 ATGAGAGCTGCTGGAAAGAGATTGATCGAGGAATCTGAAAAATGTTCTCACTCCAAGCTGGAATCTGGATCAGAGTTGATCTTTTCTCTGAAGTTGACAAGGTGTAGCAAAATATCTCATTCCAAGCAGAAAAAAATAAGGATGAAATCACATTCACAGGCAATCTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCTTTGAGTAAGGGGAATAAAAATGTGACAATTAGACAACTTGCTGGTAAAAAATTTTTGCTAAAAAAACTTGATACAAAACCGTCCAAGGAGTTACTCTTGTCAAAGCTTCAAGGTGGAAAATCTCTGTCATCAACTAATACGAAAGGGAATGCAGAAAAGGTTGAGCCGGTGGTCAAGATAAACCAACAAAGGAAAAGGAAGAAGAACAAAGGAAAAAGGGAAAAAGTGGAGTTAGATGAAGCTTCCCGCCTACAGAGGAGAACAAGATACCTTATCATTAAAATGAAGCTAGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGACCAGAAAAGGAACTTCAGAGAGCCAAGAAGCAGATATTAAAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAGCATATATTCTGTGCAAAATGCAAACTGCGTGAAGCTTTCCCAGACAACGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGAAAAGTATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTGGTTGGGAGGAAATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGGAATGCGTTGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCGGAAGATGATGACTATGATCCAGATAAGAAGGAGAATGGCCATGACAACGCAAGTAGGGAAGAAAATGATAAGGAGGTTTTGGAGGAGTCAAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTAGTTTCCGGAGACGGTATTGGATGTGAAGATCACTTTGGTGCTGGTACCAGCATAGTTTCTGATGGATCCAATGAAGAGGGCATCACATGCGGCCGACGGCAGCGACAGGCTGTTGATTATAAAAAGTTATATGATGAAATGTTTGGAAAGGATACACCAGCACACGAACAAGAAGTGAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGCGAAAAAAAGAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCTCAATTCTCACGGTAGATCATTTTTCAGAATCCCACGTCATGCAGTTGAGAAACTTCGCGAAGTGTTTGCTGATAACGAACTTCCCTCTAGAGACGTCAAGGAAAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAACACAACCCCATAGTTCTTATAATACTTCCAATGAGCTCAGATTAGCAGATTCAAAGGAAATGTCTAAGAATCTTCTTTCATTAGAGGACGCACCAATACAAGAACTGCAGCTGAAGTTGCACGGAAGTCATAGCAAGAAAAAGCAGCACAGAAAATCATCACATATATCTTCCAACTATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAAAAGAAAAACAAAGGTGAAGAAGAGAGTAAACTTTGTAGCTAGAGGTGAAGGTCAAGAAGCAGAATTGGAGATGGAGAGATTGTGTAAAATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCGAAAAGGAAGGATGATGGGATTTTAGATAGGTCACACATGATTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAGGTTTGA 2145 40.42 MRAAGKRLIEESEKCSHSKLESGSELIFSLKLTRCSKISHSKQKKIRMKSHSQAICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFLLKKLDTKPSKELLLSKLQGGKSLSSTNTKGNAEKVEPVVKINQQRKRKKNKGKREKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKSIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNIGWEEIFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKENGHDNASREENDKEVLEESSSSTSLSWSLDGEDLVSGDGIGCEDHFGAGTSIVSDGSNEEGITCGRRQRQAVDYKKLYDEMFGKDTPAHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLLNSHGRSFFRIPRHAVEKLREVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGATQPHSSYNTSNELRLADSKEMSKNLLSLEDAPIQELQLKLHGSHSKKKQHRKSSHISSNYNKDAFDFGDDISLKNLLKKRKTKVKKRVNFVARGEGQEAELEMERLCKIKGRLETMKQKLLRLSKRKDDGILDRSHMIEQSIVYVPVAVLKEKV* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26614069 26620094 + Chy2G045200.1 Chy02g02253 221701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02253 714 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677
Chy02g02253 714 PANTHER POLYCOMB PROTEIN PCL 3 688 - -
Chy02g02253 714 SUPERFAMILY Homeodomain-like 498 560 IPR009057 -
Chy02g02253 714 MobiDBLite consensus disorder prediction 600 619 - -
Chy02g02253 714 SUPERFAMILY FYVE/PHD zinc finger 229 296 IPR011011 -
Chy02g02253 714 MobiDBLite consensus disorder prediction 350 371 - -
Chy02g02253 714 Pfam PHD-finger 238 293 IPR019787 -
Chy02g02253 714 CDD PHD_PRHA_like 238 290 IPR045876 -
Chy02g02253 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Chy02g02253 714 MobiDBLite consensus disorder prediction 437 461 - -
Chy02g02253 714 MobiDBLite consensus disorder prediction 106 144 - -
Chy02g02253 714 SMART PHD_3 238 291 IPR001965 -
Chy02g02253 714 Pfam Homeodomain 505 549 IPR001356 GO:0003677
Chy02g02253 714 MobiDBLite consensus disorder prediction 328 384 - -
Chy02g02253 714 CDD homeodomain 502 555 IPR001356 GO:0003677
Chy02g02253 714 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Chy02g02253 714 Gene3D - 498 561 - -
Chy02g02253 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 3 688 - -
Chy02g02253 714 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Chy02g02253 714 SMART HOX_1 496 558 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02253 Chy-Chr2:26614069 Chy06g01043 Chy-Chr6:8363968 1.15E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17582 PF00628 PHD 1.30E-09 CL0390 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02253 - - csv:101212164 1310.43