Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy02g02257 | ATGAATATTATCGGAGACGACTACTTGAATCCCTTTGGGAATGAAATCTTCATAGGAGAAGAGCTCGACAGCTGGGGATTGGAAGAGCCGTTTTCGGGTGATTATGATTCGAGTTCGCCGGATGGATCGGCGGCTTCGAAGAACGTAGCATCGGAAAGGAATAGAAGGAGGAAGCTGAACGAGAGGCTTTTTGCACTTCGATCGGTTGTTCCGAATATAAGTAAGATGGATAAGGCTTCGATTATAAAAGATGCAATCGATTACATCCATGATTTGCATGACCAAGAGAGGAGGATTCAAGCGGAAATTTACGAGCTCGAATCAGGAAAGTTGAAGAAGATAACAGGGTATGAATTTGACCAGGATCAACTTCCCTTACTGCTAAGATCAAAGAGGAAGAAAACTGAGCAATACTTCAGTTATGATTCTCCTGTTTCAAGAATTTCCCCAATTGAAGTTCTGGATCTTAGTGTAACATACATGGGAGATAGAACAATAGTAGTGAGCATGACCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAGTCACTCAACCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGACTTCTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTACTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTTAATGATCCACATAGCCCCATGAGTATCTGA | 726 | 41.6 | MNIIGDDYLNPFGNEIFIGEELDSWGLEEPFSGDYDSSSPDGSAASKNVASERNRRRKLNERLFALRSVVPNISKMDKASIIKDAIDYIHDLHDQERRIQAEIYELESGKLKKITGYEFDQDQLPLLLRSKRKKTEQYFSYDSPVSRISPIEVLDLSVTYMGDRTIVVSMTCCKRADSMVKLCEVFESLNLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLNDPHSPMSI* | 242 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 26656731 | 26660237 | - | Chy2G045240.1 | Chy02g02257 | 221705 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy02g02257 | 241 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 41 | 107 | IPR036638 | GO:0046983 | |
| Chy02g02257 | 241 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
| Chy02g02257 | 241 | Gene3D | - | 38 | 109 | IPR036638 | GO:0046983 | |
| Chy02g02257 | 241 | Pfam | Helix-loop-helix DNA-binding domain | 49 | 92 | IPR011598 | GO:0046983 | |
| Chy02g02257 | 241 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 43 | 92 | IPR011598 | GO:0046983 | |
| Chy02g02257 | 241 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 15 | 235 | - | - | |
| Chy02g02257 | 241 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 15 | 235 | - | - | |
| Chy02g02257 | 241 | SMART | finulus | 49 | 98 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g02257 | Chy-Chr2:26656731 | Chy12g01144 | Chy-Chr12:16365054 | 4.69E-17 | dispersed | |
| Chy09g00784 | Chy-Chr9:10501633 | Chy02g02257 | Chy-Chr2:26656731 | 5.65E-19 | transposed | |
| Chy10g00903 | Chy-Chr10:14732787 | Chy02g02257 | Chy-Chr2:26656731 | 4.05E-23 | transposed | |
| Chy11g00848 | Chy-Chr11:11964100 | Chy02g02257 | Chy-Chr2:26656731 | 5.02E-19 | transposed | |
| Chy02g02257 | Chy-Chr2:26656731 | Chy05g00866 | Chy-Chr5:12681316 | 2.03E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17584 | PF00010 | HLH | 1.20E-11 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy02g02257 | - | - | csv:101203659 | 449.514 |