Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02272 ATGGAAGATCATCATGAAGATGAAATTTGCAATATCAGTTGGCTTACCCTTGGTTTGGGATTTGGTGATCAATATGTCCCAAAAAAGATTCAAAAAAACCAACAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCTAAAGAAGAATTGGAAATTACCAACAACAACAATATGGAAATTGAAGATGATGAAGCTAATTCAAGTGAAGAAGAAGATGATCATCATCATTTGATGAAGAGGATTAGAAGCAGTAATAATATTGTTAGTTACGATCATCATCGTCAAGATTCTTCCTTTGGATCAATTAGAAGATTATCATCAGATCAATACATCAACAACAACGATATTGTTAATACTACTAATCATAATTATAAAGGGATTAGTAGCAGTGGATCAGAATTAAGGGAGAGGAAAAAACTTAGGCTTTCTAAAGAACAATCCACTTTGTTGGAAGAAAGCTTCAAACTTCACACCACATTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAACTGAAACAAACAGAAGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAAGATTAAACGAAGAAAATCGAAGGTTGAAGAAAGAATTAAACGAATTAAGATCGCTTAAACTTGGAGCTTCACAATTGTATATTCAGCTGCCTAAAGCCGCGACGCTCACTATTTGCCCTTCATGCGACAAAATTACGAGGACGCCCGCCGTCGACGCCAATTCTCCGCCACAATAA 801 37.2 MEDHHEDEICNISWLTLGLGFGDQYVPKKIQKNQQQQQQQLSFTLIPKEELEITNNNNMEIEDDEANSSEEEDDHHHLMKRIRSSNNIVSYDHHRQDSSFGSIRRLSSDQYINNNDIVNTTNHNYKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATLTICPSCDKITRTPAVDANSPPQ* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26791931 26793419 + Chy2G045390.1 Chy02g02272 221720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02272 266 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Chy02g02272 266 Gene3D - 129 199 - -
Chy02g02272 266 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 12 254 - -
Chy02g02272 266 Coils Coil 193 230 - -
Chy02g02272 266 CDD homeodomain 138 195 IPR001356 GO:0003677
Chy02g02272 266 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Chy02g02272 266 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Chy02g02272 266 SUPERFAMILY Homeodomain-like 124 195 IPR009057 -
Chy02g02272 266 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Chy02g02272 266 PANTHER - 12 254 - -
Chy02g02272 266 SMART HOX_1 136 198 IPR001356 GO:0003677
Chy02g02272 266 Pfam Homeobox associated leucine zipper 194 227 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02272 Chy-Chr2:26791931 Chy06g00051 Chy-Chr6:369239 1.05E-51 dispersed
Chy02g02272 Chy-Chr2:26791931 Chy02g00808 Chy-Chr2:5048828 4.16E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17586 PF00046 Homeodomain 9.90E-16 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02272 K09338 - csv:101203427 463.381