Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02276 ATGGGCACCCTTCCCAATTCCTTCTCCCTCTTCTCTCTCTTTTTCCTCTTCACCGCCGTCTCTCCGGCAGCCCCCACCACCCACCACCGACCTCTCAACCTTATCCTAACCCACCCTTTAAAGGAAACTGTTTTTCTTGCTTCTTCTTCTTCTCCCCCACCACCTCTGTTTATTCCCTCTGCTCCACCCCCCGAGGAGAAGCCGGTCTACTCTCCATTCCACCCGAGCATGGCCGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATTACTTTCCTTCTTCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGCGGTGGTGGTCGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAAAACTCTGGCATCGACCAGACTGTTATCGAATCGTTACCGATTTTCCGATTTGGGTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCCGTTTGTTTGAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTTCCGAAATGCAAACACGCTTTCCATGTTGAATGTGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCACTCTGTCGCTACAGAGTCGACCCGGAGGACGTGTTATTAGTTGAAGACGTCAATATATTTCTTCACGACCAACCACCTCCACCGCCGCCACCACCACCAGGGGAATCGAATTCCAAGGATGTAGTGTTGAACTTAGAACAGGGGAGAAGAAGCGGCAAGGCTGGATCCGGGAGAGTCTCCGGTAGACACTCGTCAGTCGGCGAGAAGAGAACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAATAGAACCGAAACGGTGTCTGTTGGGTGCTTCGATCGGCACCGAAAAGACGGGTTACTTTTGCCGGAGGAGAAAACAAATCAAAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAGGGTGCCGGTGGTGGAGAGATGGAGCGATGTCCAAGGTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCCGACAGCCGTAGATTTTCAGTAGCTTCATTACCAGTAGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGATGA 1170 52.14 MGTLPNSFSLFSLFFLFTAVSPAAPTTHHRPLNLILTHPLKETVFLASSSSPPPPLFIPSAPPPEEKPVYSPFHPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVVGYSMRPNTMMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHDQPPPPPPPPPGESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSNRTETVSVGCFDRHRKDGLLLPEEKTNQNQNQNRLEHRIIVSPRVPVVERWSDVQGSDLLYLRSEMIISDSRRFSVASLPVELKRQRRMGMMGMMGKHAGKGTG* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26818386 26819555 - Chy2G045430.1 Chy02g02276 221724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02276 389 CDD RING-H2_EL5_like 157 200 - -
Chy02g02276 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Chy02g02276 389 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Chy02g02276 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 53 370 - -
Chy02g02276 389 SUPERFAMILY RING/U-box 138 205 - -
Chy02g02276 389 MobiDBLite consensus disorder prediction 260 274 - -
Chy02g02276 389 PANTHER RING-H2 FINGER PROTEIN ATL43 53 370 - -
Chy02g02276 389 Pfam Ring finger domain 157 200 IPR001841 -
Chy02g02276 389 SMART ring_2 158 199 IPR001841 -
Chy02g02276 389 MobiDBLite consensus disorder prediction 219 233 - -
Chy02g02276 389 MobiDBLite consensus disorder prediction 245 281 - -
Chy02g02276 389 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01893 Chy-Chr2:21838983 Chy02g02276 Chy-Chr2:26818386 3.00E-46 dispersed
Chy02g01894 Chy-Chr2:21841415 Chy02g02276 Chy-Chr2:26818386 9.87E-53 dispersed
Chy02g02276 Chy-Chr2:26818386 Chy05g01130 Chy-Chr5:15780704 9.59E-30 dispersed
Chy05g00953 Chy-Chr5:14125678 Chy02g02276 Chy-Chr2:26818386 6.64E-13 dispersed
Chy06g00319 Chy-Chr6:2142383 Chy02g02276 Chy-Chr2:26818386 1.93E-20 dispersed
Chy11g01659 Chy-Chr11:23054365 Chy02g02276 Chy-Chr2:26818386 3.61E-15 dispersed
Chy02g02276 Chy-Chr2:26818386 Chy03g01341 Chy-Chr3:16373185 3.57E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02276 K19041 - csv:101203916 667.151