Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02307 ATGGCTTCCAATTCTGCTAATCTATGGGTACTCTTGGGATTGGGTTTGGCTGGAATCCTTCTTATGACCAAAAAACTTAAGAAAGCGATCAGAGAGGACTTTGGAGCGTTCATCGAGAAATTTCAGCTACTTCCTCCCCCTCAACCTGCCCCTCCTAAAGCTCCTCATCCTCTTACCGGTCTCACCTTCGCTGTTTCCGACGTATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAAAACACATGATGCAGCTTTTCGTACATCTCCAGTAGTTTCTGCTCTGGTTGAAGGAGGAGCTACTTGCATAGGAAAAACTGTTACCAATGAATTGTCAATGGGCATCAGTGGAGAAAACAAGCATTATGAGACGCCCACAAATCCTGCATCACATTCCAAAGTTCCTGGTGGGTCATCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATCTCGTTGATTTCTCTTTGGGTATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTAGGGTTTCGACCTTCACATGGATCTGTTTCCCAAGTTGGAATTGTACCTGTTTCGTTAAGTCTTGACACTGTTGGAATGTTTGCCAAGGACCCTAATGTCTTGCGTCGTGTTGGCCACGTGCTTTTACAACTTCCATATGCGGTTCAACGCAATCCTAGACAAATTATTATAGCTGATGATTGCTTTCAACTACTGAAGATACCTGTTGATAGGATTACTCAGGCGGTGACCAAATGTACTGAGGAACTTTTTGGCAGACAAGCATTGAAGCACGAAAATCTTGGAAGCTATTTGAGTTCTAAAGTTCCAAAATTGAAAGAGTTAATTGGGAAAAAGACAAATGGGAATCTGAATTCTGCTTCAATTAGAGTGCTGGCCAATCTGATGCAGACAGTTGAAAGGATTGAATTCAAAGGCAATCATGGGGAATGGATTGACTCGGTGAAACCAGATTTAGATTCTGCTCTAATGGAGCGATTAAATGAGAAGTTGGAGATATCAGATACAATGATTGAAAACTTCAAGTCTGTTAGAAATGAAATGCGTATGGCTATTAATTCTCTTTTGAAGGATGATGGAGTTCTAGTCATCCCCACCACTGTAGATCCTCCTCCAAAACTAGGTGGAAAGGAGATTTTTTCAGAAGAGTACCAGACTCGTGTATTTAGTTCATTAAGCATTGCTAGCATATCGGGTTGCTGTCAGGTCACCGTGCCACTGGGATTTCACGATAGTTGTCCAGTATCTGTGTCCTTCTTAGCCAGGCATGGGGCAGATCGATTCTTACTAGATATTGTGCAGACCATGTACAAGTCTTTGCAAGAGGAGGGTGAGGCTGCTTCCAAATCCAAATTCTCAAAGAATGCTGTTAGCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGTAATCAAGCATACAAAGAAAAACAGTGGGAGAAGGCTATTGGTTGTTATACCGACGCCATCAAACTCAACAGCAGAAATGCTACTTATTACACTAATAGGGCTGCAGCATATTTAGAGCTTGGACGGTTTCACCAAGCAGAGGCAGATTGCAGTAAAGCTATTGGCCTGGATAAAAAGAATGTTAAATCGTATTTACGAAGGGGTACAGCAAGAGAGATGCTTGGTTTTTACAAGGAAGCAATTGAAGATCAAACTGTCACTAGTTGGATTGATTCACATTTCACACCACTCCTGTGTCCTGCATTTGCCCTCGAAAATTTTAAGATGTGTTCCCTGATCGTTGTTTGA 1791 42.49 MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTGLTFAVSDVFEIEGHVTGFGHPDWAKTHDAAFRTSPVVSALVEGGATCIGKTVTNELSMGISGENKHYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRITQAVTKCTEELFGRQALKHENLGSYLSSKVPKLKELIGKKTNGNLNSASIRVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMERLNEKLEISDTMIENFKSVRNEMRMAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTVPLGFHDSCPVSVSFLARHGADRFLLDIVQTMYKSLQEEGEAASKSKFSKNAVSQEQSAEIAKEKGNQAYKEKQWEKAIGCYTDAIKLNSRNATYYTNRAAAYLELGRFHQAEADCSKAIGLDKKNVKSYLRRGTAREMLGFYKEAIEDQTVTSWIDSHFTPLLCPAFALENFKMCSLIVV* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27097418 27107855 + Chy2G045740.1 Chy02g02307 221755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02307 596 Pfam TPR repeat 481 522 - -
Chy02g02307 596 SUPERFAMILY TPR-like 471 572 IPR011990 GO:0005515
Chy02g02307 596 PANTHER AMIDASE 1 1 564 - -
Chy02g02307 596 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 564 - -
Chy02g02307 596 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Chy02g02307 596 Gene3D Tetratricopeptide repeat domain 472 575 IPR011990 GO:0005515
Chy02g02307 596 MobiDBLite consensus disorder prediction 122 141 - -
Chy02g02307 596 Gene3D Amidase signature (AS) domain 40 451 IPR036928 -
Chy02g02307 596 Pfam Amidase 55 441 IPR023631 -
Chy02g02307 596 SMART tpr_5 508 541 IPR019734 GO:0005515
Chy02g02307 596 SMART tpr_5 474 507 IPR019734 GO:0005515
Chy02g02307 596 SUPERFAMILY Amidase signature (AS) enzymes 31 448 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02307 - - - csv:101221204 1036.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00248 Chy-Chr1:1720597 Chy02g02307 Chy-Chr2:27097418 0 dispersed
Chy02g02307 Chy-Chr2:27097418 Chy08g01006 Chy-Chr8:17311195 1.20E-138 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42