Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02313 ATGTGGACGTTAGGTTATGATGACAATGGTGGAGAGTTTTGCTTCTCAGAGGCCACTGCCTTTCATGGCGCTCGTAAGCTTCGACCTCTCGTTCCTCGCCCATTGCTATCCCTTCGTGCCAATGGTCGTCGTTCCAACATCTCTTCTCAATATTACCACATTGGTAATGTTTTGGATGAGGAAAGGAAGAGAGAGTACTTGTTGAATAATGAAAAGAGTTCGTCATCATCATCAACAACATCAAGTACTCCAATCGTAGTAAGCTCATCGAGATGGAATCCAACGGTGGAGCAGTTGAGAATTTTGGAAGAGCTTTACCGGCGGGGGACAAGAACGCCCTCCGCCGATCAAATCCAACACATCACCGCCCAGCTCCGCCGCTTTGGCAAAATAGAAGGCAAGAATGTGTTTTATTGGTTTCAAAATCACAAAGCTAGAGAACGCCAAAAACGACGCCGTCAAACTGCCGCCGATCAAACCAAACATTCTGAGAGAGAAAAAGAAGAGTACGAAATTGAAGAGACAAAGACGAAGTGCAGGTGGCCGGGAACCCCAACACCACCATCTACTGCTACTCTACTTTCACAGGAATGTACAGAAACACAGAGACGACGAACAAAATTAGTTGAATTGGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGACGAGACATGGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTGTAGTCGAATCTCACAACGAAGACCGAGGAAACAACATTGTCATTGACGACATCAACGATGAGGACAAGGATTCTAAAACGATGACACTTCAGTTGTTTCCTCTACGAAGTACCAAGTTCTACAAATACGATGTCGAGAGAGATGGACAACGAGACGGTCGATCGGGGATCATGTCCGATTCAGACGTGACCAAAAACTTCACCTTATCTCCAAGTTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 987 44.68 MWTLGYDDNGGEFCFSEATAFHGARKLRPLVPRPLLSLRANGRRSNISSQYYHIGNVLDEERKREYLLNNEKSSSSSSTTSSTPIVVSSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAADQTKHSEREKEEYEIEETKTKCRWPGTPTPPSTATLLSQECTETQRRRTKLVELEEEETRRESVERDETWNCQLINPTRKTQHLNSVVESHNEDRGNNIVIDDINDEDKDSKTMTLQLFPLRSTKFYKYDVERDGQRDGRSGIMSDSDVTKNFTLSPSCSFQFFEFLPLKN* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27156129 27158949 - Chy2G045800.1 Chy02g02313 221761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02313 328 Pfam Homeodomain 89 149 IPR001356 GO:0003677
Chy02g02313 328 Gene3D - 89 157 - -
Chy02g02313 328 ProSiteProfiles 'Homeobox' domain profile. 95 150 IPR001356 GO:0003677
Chy02g02313 328 CDD homeodomain 91 151 IPR001356 GO:0003677
Chy02g02313 328 SMART HOX_1 87 154 IPR001356 GO:0003677
Chy02g02313 328 MobiDBLite consensus disorder prediction 151 178 - -
Chy02g02313 328 MobiDBLite consensus disorder prediction 148 199 - -
Chy02g02313 328 Coils Coil 153 173 - -
Chy02g02313 328 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 59 328 IPR044555 GO:0003700|GO:0099402
Chy02g02313 328 MobiDBLite consensus disorder prediction 182 199 - -
Chy02g02313 328 SUPERFAMILY Homeodomain-like 89 154 IPR009057 -
Chy02g02313 328 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 59 328 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02313 Chy12g01399 CCT
Chy02g02313 Chy12g01399 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02313 Chy-Chr2:27156129 Chy11g01253 Chy-Chr11:18672533 1.50E-28 dispersed
Chy02g00579 Chy-Chr2:3513690 Chy02g02313 Chy-Chr2:27156129 1.98E-10 transposed
Chy03g01558 Chy-Chr3:17744966 Chy02g02313 Chy-Chr2:27156129 1.04E-28 transposed
Chy06g02276 Chy-Chr6:26696933 Chy02g02313 Chy-Chr2:27156129 1.16E-13 transposed
Chy12g01399 Chy-Chr12:18125161 Chy02g02313 Chy-Chr2:27156129 6.31E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17587 PF00046 Homeodomain 5.50E-19 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02313 - - csv:105434593 559.296