Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02334 ATGCCTTACTCATCATCCTTCTTCAACTCCTATTTCAGGAGGACTTCCATGTCCATCTCCTTCAAACCCACTTCTCCTTTTCCATTTTCAACCCGTTTCACACCTTGGATTCCTCGTCTTTTCACCCGGAGGAATATTTCAATGGGGTTTGTCAACTTGCACCACTCCCGTCCGGCCTCTGTTTCTGGTGTTGTTCGTTGTTCCACCACCCAATCCAAGTGGGTTGAAGTTTCCTTGAAAGAGAAACAACAGGACCATGTTAAGGGTTTCAAGCAAAGGAATATTGCGTTCCCCTTTGGGCAGCATCAGTCCAGTTATAATTATGGTCGCTTTGCGTGCGACGATGTTTCTAGTGATGAATCTGATGTCGAATTTGGCTCTCCCCAGGCCCAAAGGAGTTCATCAACCCTTGATAACGTAGACGAGTGGAGATGGAAGTTAACTATGCTTCTACGAAACAATGAGGAAGTAGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCAACTTTCAGCATTGGCAACCCGAATGAATTTGCATAGCCGTCAATATTCCAGAGTTGTTGTATTTAGTAAAGATCCCCTGCCGAATTATAGGCCGGACCTGGATGATAAGCGACCACAGAGAGAGGTGGTCTTACCTTTTGGTGTCCAAATGGAAGTTGAAGGTCATCTAAGATTGTACCAATCTTCTTACAAGTCTGTGTCAAGAGGGTGTTTTTCAAACAGTTACTTGCCAAATTCTGGCATTGCTGAAAACTGTGCTAACAATAATGGACTGTTTCAACACCAGGAACCTTCGACAACACAGAGCATTGTCATGGAGAAAATTCTTCGCCGCAAAAGTTTGCAACTGAGGAATCAGCAGCAAGAATGGCAGGAATCTCTTGAGGGCCAAAAAATGATAGAATTTCGCAAGAGTCTCCCTGCCTTCAAAGAGAGGGAAGCATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTCGTTGTCTCAGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGTCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGGCTTGAGGGTATGAAAGGAAGGGATACTCGTCTTCTCTTTTGCACCACTGGTGTACTACTGAGAAGATTGCTTGTTGACAGAAATTTGAAGGGTGTAAGTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTTATTGTCCTGAAAGATCTTCTTCCTCGCCGGCCAGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCCGAGCTTTTTTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATCCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATAAATTAACTTCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCGTGGAAAATGCAAAGACAAGCCCAAGCTCTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTGGAGGATGCATTTGAGGCTGCTAACTTTTCAGCATACAGTCCTCGGACTCAGGAGTCTCTATCCTTTTGGAATCCTGATTCCATTGGTTTCAACCTCATTGAGCATGTCCTCTCCTACATTGTCAAGAAGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGACGATATAAACTCTTTAAAGGACCAGCTCCAGTCTCACCCTTTATTAGGGGATCCTAGCAGAATCTTGCTCCTTGCATGTCATGGTTCGATGGCCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACAAACATGGCAGAGACCAGTATCACCATCAATGATGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCCGGCGAGTGTTACCATCTCTATCCCAGATGCGTATATGATGCTTTTGCTGATTATCAACTACCAGAACTTTTAAGGACCCCGTTGCAGTCTTTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGTATATCAGAGTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGATTATTTGAAGACAATTGGAGCTCTGGATAAGAAAGAAAATCTGACAGTTCTTGGGAAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTAGGGAAAATGCTTATATTAGGAGCTATTTTCAACTGCCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTGAGAGATCCTTTCCTTATGCCATCTGATAAAAAGGATTTAGCCGAATCAGCAAAAGCACACTTTGCTGCACGTGACTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAAAACAGCAATCCGGTTATGAGTACTGTTGGAGAAACTTTCTCTCTATGCAAACTCTTAGAGCCATTGACTCTCTGAGGAAGCAGTTCTTCTTTTTGCTGAAGGACGCTGGTCTAGTTGATTATGATTCAGAAAAATGTAACATCTCAAACCACGACGAGCACTTAATCCGTGCAGTCATCTGTGCCGGTTTGTTTCCCGGAATTTGCTCTGTTGTGAACAAAGAGAAATCAGTAGCTTTAAAAACAATGGAAGATGGTCAGGTTATGCTATACTCGAACTCAGTTAATGCTGGATATCCAAAAATTCCCTACCCTTGGCTGGTGTTCAATGAAAAGGTGAAAGTAAATTCAGTCTTTCTTCGGGATTCTACTGGGGTATCCGACTCTGTCCTGCTTTTATTTGGAGGAAATGTTTCTAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAAGGGAGCTTGATGAGCTTGTTCATCAAAAACTTTTGAATCCGAAGTTGGATATGGAGCCACACAATGAGCTACTCACAGCGTTAAGGTTGTTGATTTCAGAGGATCACTGTGCAGGTCGGTTTGTCTTTGGTCGACATATGCCTGTACCATCAAAAAAAGCGATGACCGACAGTTTACCTCGACAGAAACATGGTGATGGAGGTGGGGGTGATAATTCCAAGAATCAGCTTCAGACCCTACTTCTGAGAGCTGGACATGAAACACCAACTTACAATACCAAGCAATTAAGAAGCAATCAGTTCCGCTCCACTGTTATTTTCAACGGATTGAACTTTGTGGGCCAACCCTGTGGCAGCAAGAAACTTGCAGAAAAAGATGCAGCTGCTGAGGCTCTTCTATGGCTACAGGGTGAGACACATTCATCTTCCCAAGCTATCGATCACGCTTCTTTACTTCTAAAGAAAAGCAAAACGAAAAATACTAAGTCATCATTTCATAGTGCCAAATGGAGTTGA 3648 42.65 MPYSSSFFNSYFRRTSMSISFKPTSPFPFSTRFTPWIPRLFTRRNISMGFVNLHHSRPASVSGVVRCSTTQSKWVEVSLKEKQQDHVKGFKQRNIAFPFGQHQSSYNYGRFACDDVSSDESDVEFGSPQAQRSSSTLDNVDEWRWKLTMLLRNNEEVEVVSREKKDRRDFEQLSALATRMNLHSRQYSRVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQMEVEGHLRLYQSSYKSVSRGCFSNSYLPNSGIAENCANNNGLFQHQEPSTTQSIVMEKILRRKSLQLRNQQQEWQESLEGQKMIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVSHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYKLTSYNQIDDYGQEKAWKMQRQAQALKKRKTQIASSVEDAFEAANFSAYSPRTQESLSFWNPDSIGFNLIEHVLSYIVKKERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRILLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDKKENLTVLGKHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAHFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDSEKCNISNHDEHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDMEPHNELLTALRLLISEDHCAGRFVFGRHMPVPSKKAMTDSLPRQKHGDGGGGDNSKNQLQTLLLRAGHETPTYNTKQLRSNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASLLLKKSKTKNTKSSFHSAKWS* 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27293222 27300467 - Chy2G046010.1 Chy02g02334 221782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02334 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 577 751 IPR001650 -
Chy02g02334 1215 Pfam DEAD/DEAH box helicase 320 472 IPR011545 GO:0003676|GO:0005524
Chy02g02334 1215 Pfam Helicase associated domain (HA2) 774 851 IPR007502 GO:0004386
Chy02g02334 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 488 IPR014001 -
Chy02g02334 1215 CDD DEXHc_RHA-like 327 487 - -
Chy02g02334 1215 Pfam Helicase conserved C-terminal domain 578 710 IPR001650 -
Chy02g02334 1215 Pfam Double-stranded RNA binding motif 1117 1179 IPR014720 -
Chy02g02334 1215 Gene3D - 1098 1184 - -
Chy02g02334 1215 SMART helicmild6 605 711 IPR001650 -
Chy02g02334 1215 SMART ha2_5 773 864 IPR007502 GO:0004386
Chy02g02334 1215 MobiDBLite consensus disorder prediction 1095 1119 - -
Chy02g02334 1215 SUPERFAMILY dsRNA-binding domain-like 1111 1180 - -
Chy02g02334 1215 Gene3D - 569 729 IPR027417 -
Chy02g02334 1215 SMART DRBM_3 1117 1180 IPR014720 -
Chy02g02334 1215 Gene3D - 261 489 IPR027417 -
Chy02g02334 1215 PANTHER ATP-DEPENDENT RNA HELICASE 102 1126 - -
Chy02g02334 1215 Gene3D - 753 857 - -
Chy02g02334 1215 SMART ultradead3 309 502 IPR014001 -
Chy02g02334 1215 CDD SF2_C_RHA 568 719 - -
Chy02g02334 1215 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 430 439 IPR002464 -
Chy02g02334 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 880 IPR027417 -
Chy02g02334 1215 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 930 1012 IPR011709 -
Chy02g02334 1215 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 102 1126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02334 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 2336.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02334 Chy-Chr2:27293222 Chy04g01853 Chy-Chr4:24709459 0 dispersed
Chy10g01209 Chy-Chr10:16809856 Chy02g02334 Chy-Chr2:27293222 0 transposed
Chy10g01185 Chy-Chr10:16622748 Chy02g02334 Chy-Chr2:27293222 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70