Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02336 ATGGCCGATACTGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAACCCAAGTCCAAGCGCGGCGCAGATGTCGAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACTCAAGCTGCTGCCGATGAAACTGGCGCTAGAAACTTGGAATCTGTTAATGGTGATGAAGAACTTAAGGTCATCAAGAGGGAAGTCGAGTTTGTAATTGAAGCGGATGCTGCGGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGCGAGCTTGGATTTTCCTGGAAAATTGAGATGTGCACATTTTGCTATCTACGATGGACATGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCAGAAGAACGTTCTCTCATCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTTCGGAAAACAGATGAGTCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGACGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCAATCTTTGACTACTGATAAATCAACAAATAATTCTAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCACGCATTCAAAAAGCTGGTGGTGTTGTTGGTTCAAATGGTCGCTTACAGGGTCGTCTTGAAGTTTCTCGGGCATTTGGAGATCGCCAATTTAAAAAGTTGGGTGTTATCGCGACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAACATTTTATCATTCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCAGTCGATTTTGTGCAGAAATTATTGAAGGATGGTTTGTCCGTAGCATCAATAAGTCGACGTCTTGTGAGGGAAGCAATCCGTGAGCGACGCTGTAAAGATAACTGTACTGCAATTGTCATTGTCTTCAGGCCCAAATGA 1047 44.32 MADTAKSILEEETSKLEPKSKRGADVEDADVTVKKFKTQAAADETGARNLESVNGDEELKVIKREVEFVIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLQKNVLSSGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVAQSLTTDKSTNNSNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLSVASISRRLVREAIRERRCKDNCTAIVIVFRPK* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27308917 27314323 - Chy2G046030.1 Chy02g02336 221784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02336 348 Pfam Protein phosphatase 2C 75 334 IPR001932 -
Chy02g02336 348 PANTHER PROTEIN PHOSPHATASE 2C 19 342 IPR015655 GO:0004722|GO:0006470
Chy02g02336 348 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 19 342 - -
Chy02g02336 348 SUPERFAMILY PP2C-like 66 346 IPR036457 -
Chy02g02336 348 Gene3D - 56 346 IPR036457 -
Chy02g02336 348 MobiDBLite consensus disorder prediction 1 28 - -
Chy02g02336 348 CDD PP2Cc 75 345 IPR001932 -
Chy02g02336 348 ProSiteProfiles PPM-type phosphatase domain profile. 71 345 IPR001932 -
Chy02g02336 348 SMART PP2C_4 67 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02336 Chy-Chr2:27308917 Chy07g00305 Chy-Chr7:2510023 1.02E-34 dispersed
Chy02g02336 Chy-Chr2:27308917 Chy04g00256 Chy-Chr4:2272719 1.10E-28 transposed
Chy02g02336 Chy-Chr2:27308917 Chy11g01602 Chy-Chr11:22569796 7.61E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02336 K17500 - csv:101216467 671.774