Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02346 ATGGATCCACCACCTCCGGCCACTGCAACAACGGCCGCTGCTCCTAACTTTGCACCCAACTCCATGCAGCATCAGCAGCACAACAACTATCAAGAATCCATTGAATCCTCACCCCGTTCCCACAATGCAGATTGGGACGACCCTCTCCCCCCAGTTCCCGGCGCCAAGCTCCGTCTCATGTGCAGCTATGGCGGCCACATTATCCCCCGTCCTCATGATAAGTCCCTCTGCTACGTCGGCGGCGACACTCGTATTGTCGTCGTCGACCGCCATTCCTCACTCTCTGACCTCTGCATGCGTCTCTCCCGAACCCTCCTTAATGGCCGCCCTTTCACCCTCAAGTACCAACTCCCTCACGAAGATCTCGATTCCCTTATTTCCATTGCGACGGATGAAGATCTCGAGAATATGATTGAGGAATATGACCGAATCACTATGGCTTCGCCGTCGAAACCTTTACGAATTCGTTTGTTTCTCTTCTTCATCAAGCCAGAAACTGCGGCGTCTATGGGTTCGTTGCTTGACGATGCTAAACACGAAACGTGGTTTGTTGATGCCTTAAATAACTCTGCTGGGATGATTCCTAGAGGGCTTTCTGATTCAGCTACTATGGAATGTATGGTGAATCTCGACGCGGTTCATACGAGTGATTCGTGTAATGATTTGGAAAATCAAGGACATGATTCTTTAGGGCATATTGACAAACAGGTTGTGAAGAATAGTAGTTCGGCTCAAGATGTACAATCGATTCCTGATTCTCCTGCTGTGGAAAACGATTCTTCGTTTGGTTCGTCTTCTTCGGTGCCATCAATGTCCAATTTGCCGCCGATACGTGTCCGTGTGGAAGAGACAGAGGGTAGAGTTCAAGATCCGAAGGTGGGATTGGAAGAGCAGTTTGGGCAGATGAATTTTGGTGTTCCTCCAATTCCTACGGCGTTGGCTGCTGCTGCAGCAACTATTTCATTGGGTGTTATTTCAAATCATGAAAACGCTAATCGGGTCTTTCTCGACGACGAGAGACCGGAACAGGCCGGTACGGTGGCGTTTCGGAAGCCTCCATTGCCATTGCAAACCTTGCAAAACAGGGGTGTTGCCAGTCCTGTTGTTAGCGGTGGTTTTGGTCTACCGTCGCCGGATTCTGTTGCCAGTGATAGTAGCATAGCATCAGCAAATTCTCAGTCCAAACCCATATATTTTCATGACCAAATTATGAGAGAGAACCAAGTTCCAGCCACTCCCATTACAGAAAGTGATGGTTTCCTAACAAGTCAACAAGTACCAATTCAACACCTCCATGATCCTGCTTATCTCTTGACTTCACAATTAGATCAGAAGCAACCACAACAATTCGTCCACGCGACCACCCATTACATCCATCACCACCACCCTGCAGCCGCAGCGGGGCATGTCCCCGTTCAACAGTATTATCATCCTATTTACACTCCAACACCATCTCAACAGCAACTTCATCATCCAATTGATCAGCAATATCCGGTCTATCTAATGCCCATTACACAAACTCAACCAACCTACAATATGTCAGTCCAATCAAGTCCTGCTGAAACTCCCTTGGCTGTACCCAACCGGCAAGCATCGGCTAGCCCCGCCATTGTCTCTTCTTCAATTGTTTACAATGATAGTAATCAACCATCCCTCTATCCTCAGAAAGTTACCGCCGCTATGCCAGAAATGGCAGCTAACGTGTACAGAACTGCGGTGACGTCAAATCCTCCTCCCTTATTACAAGTTCCTCACAATCAGTTCCAACAACCATACATGGGTCTTCCCCAAATGAACTATCCATCTCAATCTTTAGCTGTCGCTCCGGCCCCCTCGGGCACTGCTAATTATGGTTTTGACTACACTAATGCTCCACCCCAGAACATCCCAGCTACGCCGATGGCTTCTCAGTACCAAACTATGACTCAGGCAGCCGCGGCCGCTCTATCCGATGCTTCTAGACAGCTTCCAGTAGATGGCACACAGCAGCAACAGGTCAGGAACTCATAG 2010 48.76 MDPPPPATATTAAAPNFAPNSMQHQQHNNYQESIESSPRSHNADWDDPLPPVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKYQLPHEDLDSLISIATDEDLENMIEEYDRITMASPSKPLRIRLFLFFIKPETAASMGSLLDDAKHETWFVDALNNSAGMIPRGLSDSATMECMVNLDAVHTSDSCNDLENQGHDSLGHIDKQVVKNSSSAQDVQSIPDSPAVENDSSFGSSSSVPSMSNLPPIRVRVEETEGRVQDPKVGLEEQFGQMNFGVPPIPTALAAAAATISLGVISNHENANRVFLDDERPEQAGTVAFRKPPLPLQTLQNRGVASPVVSGGFGLPSPDSVASDSSIASANSQSKPIYFHDQIMRENQVPATPITESDGFLTSQQVPIQHLHDPAYLLTSQLDQKQPQQFVHATTHYIHHHHPAAAAGHVPVQQYYHPIYTPTPSQQQLHHPIDQQYPVYLMPITQTQPTYNMSVQSSPAETPLAVPNRQASASPAIVSSSIVYNDSNQPSLYPQKVTAAMPEMAANVYRTAVTSNPPPLLQVPHNQFQQPYMGLPQMNYPSQSLAVAPAPSGTANYGFDYTNAPPQNIPATPMASQYQTMTQAAAAALSDASRQLPVDGTQQQQVRNS* 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27360315 27362735 + Chy2G046130.1 Chy02g02346 221794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02346 669 PANTHER OS05G0427100 PROTEIN-RELATED 1 664 - -
Chy02g02346 669 Pfam PB1 domain 72 160 IPR000270 GO:0005515
Chy02g02346 669 SUPERFAMILY CAD & PB1 domains 72 170 - -
Chy02g02346 669 MobiDBLite consensus disorder prediction 240 274 - -
Chy02g02346 669 MobiDBLite consensus disorder prediction 13 38 - -
Chy02g02346 669 CDD PB1_UP2 60 160 - -
Chy02g02346 669 Gene3D - 76 160 - -
Chy02g02346 669 SMART PB1_new 71 160 IPR000270 GO:0005515
Chy02g02346 669 MobiDBLite consensus disorder prediction 1 49 - -
Chy02g02346 669 MobiDBLite consensus disorder prediction 240 273 - -
Chy02g02346 669 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 664 - -
Chy02g02346 669 ProSiteProfiles PB1 domain profile. 56 160 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02346 - - - csv:101210340 1196.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00352 Chy-Chr2:2274343 Chy02g02346 Chy-Chr2:27360315 6.26E-19 dispersed
Chy02g02346 Chy-Chr2:27360315 Chy03g01287 Chy-Chr3:15909784 1.41E-33 dispersed
Chy01g00170 Chy-Chr1:1168295 Chy02g02346 Chy-Chr2:27360315 9.02E-36 transposed
Chy02g00351 Chy-Chr2:2273975 Chy02g02346 Chy-Chr2:27360315 3.77E-17 transposed
Chy03g00086 Chy-Chr3:862402 Chy02g02346 Chy-Chr2:27360315 2.41E-29 transposed
Chy10g01177 Chy-Chr10:16573901 Chy02g02346 Chy-Chr2:27360315 1.82E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33