Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02350 ATGGCTTCCAAACTTCAAGTCCTCTTCAAACCAACTCTTGTTTGTTTCTTTACATTCATCTTCTCAACCTCAGCTTCTGTAACATTTAAGGACTGTGAGCCAAGAAATTGTGGGCATGGCCCTGTTATAAAATACCCCTTTTGGATTGATGGTGTGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTCCAGAGATTACCCTGTTCTTGAGATTTCCGATGACATTTTTATCGTCGAGGACATTTTTCACCAAACCAATTCGTTTTTACTGGTGAGTGCCGCAGCTTACGACGATCCACATTCATGTCCATCTCCCTCTCATGGCATTCGTCTAGATGGAAAGCCATTCCATTCTACTTCAGAGAATGAAGATTTCTTCTTCTTCTATGATTGTCCAAAAGTGTACAAAGATTACATCTATGAACTTACCTGTACTACCAACAAAACCCACTTTTCTTTTGCTACTTTCCACAAGGATCTTCTGGAGTTTCAGAACTTTCCCTTACAGTTGTGTCGTTCTTCGGTTCGTGTTCCTATTCGCAAGAACTTGACTGCTAGTGTAGCTGATTTGAGGGAAATGAGTTATGTTGAGATTTGGAAAAGGGGTTTTTTCCTGAATTGGAATGCACAAGATTGCAGCAAATGTGAGCAAAGTGGTGGTTATTGTAGATTGGAAAACAATAAGTTTGTTTGTTCTTGTAGCGATGGACTTCATTCCAATAGCTGCAAACATGGAAATAGGACTAGAACAAAGATTATCATCGGGGTATGCAGTGGTGTTGGAGCTTTGCTTTTAATCTTTCTTGTTCTTGTAATCTGCTGCCGATGGCGTCAGCTTCGTCGTAGAAGGTCTCATGCATTGCCGTATGTGCAACGAAGCATTTCATTGAATCCGTCGAATCCCGCAAATCCGTCTCCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGCTTTGGCACTGTGTATTTTGGTAAGAGCAGCCATTTAAATCTAGTTCGAAACATTATTTATGCTTGA 1110 40.99 MASKLQVLFKPTLVCFFTFIFSTSASVTFKDCEPRNCGHGPVIKYPFWIDGVQDSSCGYPDFKIKCSRDYPVLEISDDIFIVEDIFHQTNSFLLVSAAAYDDPHSCPSPSHGIRLDGKPFHSTSENEDFFFFYDCPKVYKDYIYELTCTTNKTHFSFATFHKDLLEFQNFPLQLCRSSVRVPIRKNLTASVADLREMSYVEIWKRGFFLNWNAQDCSKCEQSGGYCRLENNKFVCSCSDGLHSNSCKHGNRTRTKIIIGVCSGVGALLLIFLVLVICCRWRQLRRRRSHALPYVQRSISLNPSNPANPSPVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYFGKSSHLNLVRNIIYA* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27390919 27392253 + Chy2G046170.1 Chy02g02350 221798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02350 369 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 356 IPR044652 -
Chy02g02350 369 Gene3D Phosphorylase Kinase; domain 1 312 365 - -
Chy02g02350 369 Pfam Wall-associated receptor kinase C-terminal 161 240 IPR032872 -
Chy02g02350 369 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Chy02g02350 369 SUPERFAMILY Protein kinase-like (PK-like) 323 367 IPR011009 -
Chy02g02350 369 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 26 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02350 - - - cmo:103494139 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02350 Chy-Chr2:27390919 Chy07g00718 Chy-Chr7:7215878 1.90E-26 dispersed
Chy12g01423 Chy-Chr12:18282102 Chy02g02350 Chy-Chr2:27390919 1.07E-11 transposed
Chy10g01168 Chy-Chr10:16528969 Chy02g02350 Chy-Chr2:27390919 3.79E-09 wgd
Chy12g01422 Chy-Chr12:18279054 Chy02g02350 Chy-Chr2:27390919 3.61E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73