Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02360 ATGAGGCAGTTAACTGGAAGGATAAAGGAAATGAAGCGTTTCGGGATCAATGTTGAAGAAACTGTTGTGGTTTTGCGTCATGCTGCTTTGGAAAAGCCTTTTCTTCCATATTTGGTTCCTCTGTTTTTTCTTGCTTGGGCTTTCGATAAATGGGTTTTTTCTTTCTCTAATTGGATTCCGCTTGCTATTGCCGTGTGGGCGACTTTACAGTATGGTAGTTTTCAACGTCAACTACTAGTAGAGGAGTTGAACAAGAAATGGAAGCAAATTGTACTAGACACCTCGCCCAGTACACCACTTGAGCACTGTGAATGGTTAAATAAGCTGTTGACGGAGATTTGGCCTAACTACATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTGTTGGAGTTTTCTTTAGGCTCATGTCCTCCTGGCTTGGGTCTTCGTGGGACTCAATGGTCAACATCTGGTAATCAGAGAATCATGCGCTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAATAGCATTCACATAATGGGTGATCTTCTCTTGAGACCAATCTTGGATGGGAGAGCAATTTTGTATTCATTTGTTTTCACTCCAGAAGTGAGGATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTACCTGCAACTGAGCTGCCGGGCGTTTCCTCTTGGCTGGTTAAACTTCTAACAGATTTTATAGTAAGGACAATGGTTGAACCTCGGCGCCGCTGTTTCTCATTGCCAGCTGTTGATCTGGGTAAAAAGGCTGTCAGTGGTACAATATATGTGACAGTCATCTCAGCCAGCAAGCTTTCCAGAAACAGCTTGAGAGGAAACTCTTCCAGGAAACCACTGAGTACTTATATGAATAGTGCACTAGACGAAAACTTAACTGATAAGGATGATTTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTGCTGTAAGATTAGGCTCCAACCCCGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATTTATATGAGTCAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCTACATCATTTTGGGCAATAGGATCTGACTCTGAAGTGATTGCAAAGCACAGTGAGTTTTGTGGAAAAGAGGTCGAAATGGTTGTCCCATTTGAAGGAGTTGATTCTGGGGAGTTAACAGTGAAGCTTATCGTTAAAGAGTGGCAATTTTCTGATGGTTCACATAGCTCACATAATTTTCATGTTAGACCTCAACAATCAGTTAATGGATCTTCAAACTTTGCTTCAAGAACTGGAAGGAAGATGGCCATTACCCTTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCTGGGAAGTGTGAATCATATGTAAAATTGGAATATGGGAAGGCTCTCCTGAAAACAAGAACGGGTATTTCTGTAAATCCTAATTGGAATCAGAAGTTTGAGCTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGTGTAGATATATTCAGTGATGAAAATATCGGTACTGCCCGAGTTAATTTGGAAGGACTTCATGAAGGAGTAGTCAGGGATGTATGGGTCCCCCTCGAAAAAGTAAATTCTGGAGAACTAAGGCTAATGATAGAGGCAGTCAAGGCAGATGACTATGAAGGATCAAGGGGTTCAAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTAAGAGTACAATATGGAAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCAAGCATAGGTGACTGTGTTGTCGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTTAAACGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAGAGAAGACTTAGTTTAGAACCCACCTCGGATTCTGAATCATCTGTCACCAAGGCACATCAAGTTTCAAGTCAGATGAAGCAGACAATCCTCAAGTTTCACGCTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCGGCATCGTTGAATGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATATTACAGCTTGAAACTGAACAAACGCTTCTTATAAATAAGATTCTTAACACTTTCTCTTCTCTCCGTACCCACACTGAGCATAGCGGCAAAAGAATCCCTAAAACCTCCCACAATTCTGCACCCCCTTCTTCTTCTTCTTCTTCTTGGATCTCCAAATGGCCTTCTGGGAGCTCACGGAATGATCGTAAAGTCGAGAAGAAGGTGGTCCGACCGTCCCGACATGATCGGACTGATCGAGCGGAGAATCAGACCGAGTACTTAGATAAGGATAAGGGGCAGACTGCAATTGAGCGAATCGTGCTTCGCTTACGGAATTTAGGGATAGGTTCCGATGATGAGGACGAGGACGAGGAGGATGGAGAGGATGACGGATTGGATTCTCTCAAGGCAAGGCCGGTGACTGGGGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCCGATGCCTCATTGGTTTCGAATGAGGATGGGGAGGATGGAATGGTTTTACCTTGGGAAAGAGAGGAGGAAAGGGGTGAAGAGGAGGAGTGTGGAAGGGGGTTGAAGAGGAGAAATATGAAGGCTCCGACTTTAGCTGAATTGACTATTGAAGATGTGGAGCTGAGGCGACTTAGGAGAATGGGGATGTCTATTAGAGAGCGGATTAATGTACCGAAGGCGGGGATTACACAGGCAGTGTTGGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTCCATGAGGAGCTTGCGCATGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACTGGTGGATTGGTTCTGTGGAGGTCTGGAAGTGTTATGGTTGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCCTTACAAGGGATGGGGATGGGGTATTCATCCCAGATGTTTCTTCTGCTGCCACTTCAACGGGTGACAATGTTGCAGCTTCAGCTCCAGAGAAGACTATGATGCCGATTGGGCCTCCAAAGTCTAACGAGGGCTTGTCAGAGGAAGAAGCTGAATACAACCAACTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTGTTGATGCCGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAACTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAATAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTCAAAAGAGGCATACAGAACACCAATAATAAACTCATGGCTGAGGAGATAGGGAACTTAACAGGAGGTGTGTTACTATTGAGGAATAAATATTTTATCGTCATATACCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCTGTAGCTTTGACAGAAAGGCAGGAATTAACGAAACAGATTCAAGATGTGGAAGAGAAAGTTCGAAGTAAAGTGGTCGAGGCAACTTCATCAAGCGTTGATGGACAGGCACCTGCAGGTACCTTGGCCGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAAACGAATTGAACACAAGCTAGGTGTTGCCCAAGCCAAGAAACTTAGAGCAGAAAAATTGCTATCTAAAATCGAAGCATCCATGGTTCTTTCTAGCCCCGACGATGACCAGGAAACAATAACAGATGAGGAACGAGTCATGTTTCGGAGGGTTGGGTTACGAATGACCGCATATTTACCTATGGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACACTGGAAGCATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAAAAACACTTGCTTTTGTGGAAGAAACTGCAAGATTGTTAGAGTATGAGAGTGGTGGAATACTTGTTTCGATAGATAGAGTTCCAAAAGGATATGCCCTTGTTTACTATCGTGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTGAAGCGTTCAGTTGCCATGCAGCGTCATGAGGCTCTCAGTCAGCACATATCTGAACTCGAGCAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATGAGAATAAATTGTCGTCTCAGGATCGGCCTGTCTCAGAATCTTTCCAAGTTGAAGGATGTGGAAAATGTAACAATCCCGAACCCAATTTCTGCCTTAGTTGGCCCGAACATTTTCATTGCCGTTTCCCATTGAAAGCTGGGTAA 4809 43.09 MRQLTGRIKEMKRFGINVEETVVVLRHAALEKPFLPYLVPLFFLAWAFDKWVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWKQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFSTIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIMGDLLLRPILDGRAILYSFVFTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFSLPAVDLGKKAVSGTIYVTVISASKLSRNSLRGNSSRKPLSTYMNSALDENLTDKDDLQTFVEVELDELSRRTAVRLGSNPVWNSTFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTSFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDSGELTVKLIVKEWQFSDGSHSSHNFHVRPQQSVNGSSNFASRTGRKMAITLVEGKDLSLKDKSGKCESYVKLEYGKALLKTRTGISVNPNWNQKFELDEIGGGEYLKIKCFGVDIFSDENIGTARVNLEGLHEGVVRDVWVPLEKVNSGELRLMIEAVKADDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKERRLSLEPTSDSESSVTKAHQVSSQMKQTILKFHALIEEANLDGLSASLNELESLEELQEEYILQLETEQTLLINKILNTFSSLRTHTEHSGKRIPKTSHNSAPPSSSSSSWISKWPSGSSRNDRKVEKKVVRPSRHDRTDRAENQTEYLDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDGEDDGLDSLKARPVTGEERLGDLLQREWIRPDASLVSNEDGEDGMVLPWEREEERGEEEECGRGLKRRNMKAPTLAELTIEDVELRRLRRMGMSIRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPLTRDGDGVFIPDVSSAATSTGDNVAASAPEKTMMPIGPPKSNEGLSEEEAEYNQLLDGLGPRFVEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVRSKVVEATSSSVDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVKRIEHKLGVAQAKKLRAEKLLSKIEASMVLSSPDDDQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQMKKEIGVTEDSDDENKLSSQDRPVSESFQVEGCGKCNNPEPNFCLSWPEHFHCRFPLKAG* 1603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27474784 27487359 + Chy2G046270.1 Chy02g02360 221808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02360 1602 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 617 732 IPR035892 -
Chy02g02360 1602 ProSiteProfiles CRM domain profile. 1406 1506 IPR001890 GO:0003723
Chy02g02360 1602 Gene3D - 1407 1508 IPR035920 -
Chy02g02360 1602 Gene3D - 1000 1097 IPR035920 -
Chy02g02360 1602 Gene3D - 1197 1289 IPR035920 -
Chy02g02360 1602 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 491 602 IPR035892 -
Chy02g02360 1602 Pfam CRS1 / YhbY (CRM) domain 1198 1282 IPR001890 GO:0003723
Chy02g02360 1602 Pfam CRS1 / YhbY (CRM) domain 1409 1495 IPR001890 GO:0003723
Chy02g02360 1602 Pfam CRS1 / YhbY (CRM) domain 1005 1085 IPR001890 GO:0003723
Chy02g02360 1602 ProSiteProfiles C2 domain profile. 604 717 IPR000008 -
Chy02g02360 1602 SUPERFAMILY YhbY-like 1198 1290 IPR035920 -
Chy02g02360 1602 ProSiteProfiles CRM domain profile. 1196 1293 IPR001890 GO:0003723
Chy02g02360 1602 SUPERFAMILY YhbY-like 1002 1094 IPR035920 -
Chy02g02360 1602 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 99 285 IPR031468 GO:0008289
Chy02g02360 1602 MobiDBLite consensus disorder prediction 861 892 - -
Chy02g02360 1602 Coils Coil 785 812 - -
Chy02g02360 1602 Pfam C2 domain 296 405 IPR000008 -
Chy02g02360 1602 Pfam C2 domain 623 719 IPR000008 -
Chy02g02360 1602 Pfam C2 domain 492 588 IPR000008 -
Chy02g02360 1602 SMART C2_3c 297 415 IPR000008 -
Chy02g02360 1602 SMART C2_3c 491 585 IPR000008 -
Chy02g02360 1602 SMART C2_3c 622 716 IPR000008 -
Chy02g02360 1602 Gene3D C2 domain 295 441 IPR035892 -
Chy02g02360 1602 CDD C2 494 588 - -
Chy02g02360 1602 Coils Coil 1519 1553 - -
Chy02g02360 1602 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 406 IPR035892 -
Chy02g02360 1602 SUPERFAMILY YhbY-like 1407 1505 IPR035920 -
Chy02g02360 1602 Coils Coil 1291 1318 - -
Chy02g02360 1602 ProSiteProfiles C2 domain profile. 472 586 IPR000008 -
Chy02g02360 1602 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 802 1565 - -
Chy02g02360 1602 MobiDBLite consensus disorder prediction 912 931 - -
Chy02g02360 1602 Gene3D C2 domain 472 605 IPR035892 -
Chy02g02360 1602 Gene3D C2 domain 611 734 IPR035892 -
Chy02g02360 1602 MobiDBLite consensus disorder prediction 1116 1141 - -
Chy02g02360 1602 MobiDBLite consensus disorder prediction 837 860 - -
Chy02g02360 1602 SMART CRS1_YhbY_2 1408 1495 IPR001890 GO:0003723
Chy02g02360 1602 SMART CRS1_YhbY_2 1002 1085 IPR001890 GO:0003723
Chy02g02360 1602 SMART CRS1_YhbY_2 1198 1282 IPR001890 GO:0003723
Chy02g02360 1602 MobiDBLite consensus disorder prediction 828 892 - -
Chy02g02360 1602 ProSiteProfiles CRM domain profile. 1000 1096 IPR001890 GO:0003723
Chy02g02360 1602 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 802 1565 IPR045278 GO:0000375|GO:0003729
Chy02g02360 1602 CDD C2 623 719 - -
Chy02g02360 1602 ProSiteProfiles C2 domain profile. 276 416 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02360 - - - csv:101204113 1540.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02360 Chy-Chr2:27474784 Chy04g00382 Chy-Chr4:3369942 7.06E-07 dispersed
Chy07g00484 Chy-Chr7:3858367 Chy02g02360 Chy-Chr2:27474784 6.29E-06 dispersed
Chy01g00263 Chy-Chr1:1840631 Chy02g02360 Chy-Chr2:27474784 9.66E-24 transposed
Chy02g01232 Chy-Chr2:8966350 Chy02g02360 Chy-Chr2:27474784 1.03E-160 transposed
Chy03g00075 Chy-Chr3:759708 Chy02g02360 Chy-Chr2:27474784 1.26E-129 transposed
Chy03g00858 Chy-Chr3:11812773 Chy02g02360 Chy-Chr2:27474784 8.14E-22 transposed
Chy04g01002 Chy-Chr4:14718883 Chy02g02360 Chy-Chr2:27474784 1.21E-08 transposed
Chy04g01490 Chy-Chr4:21554607 Chy02g02360 Chy-Chr2:27474784 3.05E-153 transposed
Chy04g01593 Chy-Chr4:22385067 Chy02g02360 Chy-Chr2:27474784 4.36E-24 transposed
Chy05g01387 Chy-Chr5:17922529 Chy02g02360 Chy-Chr2:27474784 2.85E-09 transposed
Chy06g00215 Chy-Chr6:1391482 Chy02g02360 Chy-Chr2:27474784 3.87E-08 transposed
Chy06g00516 Chy-Chr6:3484638 Chy02g02360 Chy-Chr2:27474784 1.41E-162 transposed
Chy09g00368 Chy-Chr9:3212926 Chy02g02360 Chy-Chr2:27474784 7.64E-24 transposed
Chy10g00891 Chy-Chr10:14680126 Chy02g02360 Chy-Chr2:27474784 1.36E-08 transposed
Chy12g01241 Chy-Chr12:17070905 Chy02g02360 Chy-Chr2:27474784 2.38E-09 transposed
Chy12g01439 Chy-Chr12:18388118 Chy02g02360 Chy-Chr2:27474784 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8