Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02393 ATGGACTCGGACGAAGAAGATTTCGTTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGTCGTAAAAGGAAATCTGTGGCTGACGCTTCGGGTACCATGCGAACCCTCCCTCACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGCAGAAGATTTCATGGGGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCGAAAGAAGGTTGGACTCCACAGTCATTTACATCATCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTAAACTTCTTAGACGAAGATGAAAAAGCCGAATTGGAAGGCCGAGGCCTGGGGACATCTGCTCAGTTTGATACATTTGGGTTCACAGCTGTAGAGCTTGCTCGTAAACAAGCCGACAAGGAGCAACAACAGAGGCCGTCTGCTATTCCTGGACCTGTTCCTGATGAATTAATTGTTCCAGCTGCAGAATCTATAGGTGTGAAGCTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCACGAGCTAATTCCCGTTATGATGCTCGAAGAGATGCACGAAAAGCATTTCTAGCATTTTCAACTGGTGATGTCAAATCGGAAATCCCCAATTCTGAACCGTTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATGTTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCATGGTTTAGGTTTTGATCCTTACAAGCATGCACCAGAGTTTATGGAAAAGAAAAGAGCGCGCACAGCTGGGAATCAGGAAGGTTACAAAAAAGTTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGAGAGGATTGCGTCTGGCTTTGGCATTGGTGCGCTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCAGGTTATGAGTTCGAGGAAACATATGTACAAGAAGAGGACGAGCCTCCTTCTAAGATGATCACAGATGGCAAACAAAAGTTGATTGGAAGAAAAGTTGAGGGTGTCTTGCTTGGATTTAGAATTGCTTCGAAATCTGACTACCAGATGGAAAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCCCACCACAAATTTGCAGGGCCTCTCATCGGTGGCTATAAGCTTGCTGACACTCCTCCTGTTGAGGTTCCCCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGGGTGGCAACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAATGGAGGAACTGGCCAGGAATATTATTCGAGGAAGCTATGGGAGGAGCAACTGAAGCGTGTGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCGAGCCTGAAGAAGATGACAGCCGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGTGCTAAAGAGTTAAATCCACCTGCAGCTTCTGATGGTGTGCATGTCCAATACAATCTTTCGGATACATTTACTAAACCTACATCATCGGGTGGGATGCCAGAGATTGTCAAACCTTTCAAGGACTATCCAGCTAAGCAAGAAAGATTTGAGCAGTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACCGGTGCTCCTGTTGGAGCTATTAATATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCGATTGAGAAAGGGAAAGGGTTGAAAGAAACTAAGCTCTCTGCTGAGCACTTTGTGGATTTTTTAGCCACTGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACAAAGCTAGAAGGTTTAATGATGGAGAAAATGATCCCAAAACGAGAAGAATATCAGTGGCGCCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCAGCACCTAGAATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCAACAAAGGTTGAAGAATCATTAACCTCAACCCCTTCTTCATTACCTCAATCAAATGCTGAAGAAAAAGACATGGATGCATCTGAAAATGTGAATGAAAAAGTAGAAGTTGAGTGTGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAATCGGACGATGAAGAGAGTACATCAACTCTCAAGCAAGCCGAGGATCCTAAAAAGAAAGTTGAAGTAGCTAATACAACACTTAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCCCCAGATCCACCTCCATCAAAGAAAGGCCTAACCGATGTTCCTCAGAATGATGCTGTACCTGTTGGTGAACAGAATATCAATATCCTTTCAGTTGAAGATAAGCCTTATCCCACTCCATCGTCCACTGGGATTCTATCGGACCATCGAATGACAGGCACTGGGGGACATGATCTAAATAGCAGAAAAGAAGACAATGAACTCATTCATAACTCAGCTGGAAGTGGTGGTAAAATTATGGAATCCAGCTCTTCCAAGAAAACTTCAGGTAAAGTTTATGAAGAAAAGATGTACAAGGACAAGGGGGATAGGAAGGCTAACAACAGGCGAGTTGACATTCATTGTGATTGTAGCGGCAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGCAGATATAAAAGTAGTGACTCAGAGGATAGTGCATCAAGGGATGATTATCATACGAAAGAGCACTCTAAATCACGAGATAGAAAAAAAGGATCTTCTGAAGAAAAGAAGAGCCGAAGAAAACACTCAAAACATCACAAGCACAGACATAGAGATTCTTCCCCCAGAGACCGTCATCGCTCGGGAAAAGATCGTACAGTATCTGAAAGAGAGAAACATAGATGGAGAGATTGA 3009 43.44 MDSDEEDFVFYGTPIEREEEINSRKRKSVADASGTMRTLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSAQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIKDSRANSRYDARRDARKAFLAFSTGDVKSEIPNSEPFQEDDDIVSPQPAKGDVSSSQSTPVYVINPKQDLHGLGFDPYKHAPEFMEKKRARTAGNQEGYKKVFSTKNNLFGFRTERIASGFGIGALEELDVEDEDVYTSGYEFEETYVQEEDEPPSKMITDGKQKLIGRKVEGVLLGFRIASKSDYQMERFDPPVIPKDFIPHHKFAGPLIGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLNGGTGQEYYSRKLWEEQLKRVDQPKPQFDDKLSPSLKKMTAESRGKILGEKPLARSAKELNPPAASDGVHVQYNLSDTFTKPTSSGGMPEIVKPFKDYPAKQERFEQFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKETKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLEGLMMEKMIPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKSTKVEESLTSTPSSLPQSNAEEKDMDASENVNEKVEVECVDRPVDLYKAIFSDESDDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDPPPSKKGLTDVPQNDAVPVGEQNINILSVEDKPYPTPSSTGILSDHRMTGTGGHDLNSRKEDNELIHNSAGSGGKIMESSSSKKTSGKVYEEKMYKDKGDRKANNRRVDIHCDCSGSSSSEDEKRRKRSRRRRYKSSDSEDSASRDDYHTKEHSKSRDRKKGSSEEKKSRRKHSKHHKHRHRDSSPRDRHRSGKDRTVSEREKHRWRD* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27711536 27721869 + Chy2G046600.1 Chy02g02393 221841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02393 1002 SUPERFAMILY Surp module (SWAP domain) 393 463 IPR035967 GO:0003723|GO:0006396
Chy02g02393 1002 MobiDBLite consensus disorder prediction 819 1002 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 67 87 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 741 760 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 71 87 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 786 806 - -
Chy02g02393 1002 Pfam Surp module 413 460 IPR000061 GO:0003723|GO:0006396
Chy02g02393 1002 MobiDBLite consensus disorder prediction 693 721 - -
Chy02g02393 1002 Pfam Protein of unknown function (DUF1604) 39 118 IPR011666 GO:0006397
Chy02g02393 1002 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 799 - -
Chy02g02393 1002 PANTHER BNACNNG56020D PROTEIN 1 799 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 208 237 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 879 903 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 982 1002 - -
Chy02g02393 1002 SMART surpneu2 411 463 IPR000061 GO:0003723|GO:0006396
Chy02g02393 1002 MobiDBLite consensus disorder prediction 928 959 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 846 860 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 826 840 - -
Chy02g02393 1002 Gene3D Surp module 392 465 IPR035967 GO:0003723|GO:0006396
Chy02g02393 1002 MobiDBLite consensus disorder prediction 960 981 - -
Chy02g02393 1002 MobiDBLite consensus disorder prediction 693 711 - -
Chy02g02393 1002 ProSiteProfiles SURP motif repeat profile. 413 457 IPR000061 GO:0003723|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02393 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1803.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00378 Chy-Chr10:9234392 Chy02g02393 Chy-Chr2:27711536 4.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g384 . . . . . . . . . . . . . . . . Cpe04g01420 Bhi02g00019 Tan09g1962 . . Hepe09g0315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01363 . Chy02g02393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33