Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02401 ATGAGGTCTCGGCGCTTCGCTTCCACTGGATCCGTCGCCGATCTTACTGTCATTGCCGTCTTGTTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAGGTCATCTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGTGACTGCTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACTGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAATCAGTGTTGGTTCTGCAGGAACAAGTAACAAAACTGTCAAACTCCCTAAAAACTTCACGCTTAAAGCACCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAATTTGTTTCTGGAGACAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAACGTTACATGCACCTATTCTCAATTTCTTGCTCAGAAGACACCTACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAATAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCCTTTTTGGCTTCAGTTGTATCAACTCCTGATAAATCAGGCAACAATCCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCTATTCGAGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGAGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACTCTCTGGAATCTGGTGGTGCAGCATCCCAATTTTGATAATATCACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACCGCGATGTTATGGGGAGTTAAGTTCTACAACGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTTCTATTCCAAAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTCCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCTTACTTGCCAAATGCCAGTTCCAGACCAGTTATATCTCTACTTGTGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 43.93 MRSRRFASTGSVADLTVIAVLFLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQISVGSAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVRPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPFLASVVSTPDKSGNNPPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPVISLLVTILISLALLLNFAQ* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27765988 27768755 + Chy2G046680.1 Chy02g02401 221849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02401 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Chy02g02401 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Chy02g02401 455 PIRSF COBRA 9 455 IPR006918 GO:0010215|GO:0031225
Chy02g02401 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02401 Chy12g01483 CCT
Chy02g02401 Chy12g01483 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02401 Chy-Chr2:27765988 Chy07g00750 Chy-Chr7:8105336 0 dispersed
Chy02g02401 Chy-Chr2:27765988 Chy02g02402 Chy-Chr2:27769415 0 tandem
Chy01g00699 Chy-Chr1:5113736 Chy02g02401 Chy-Chr2:27765988 2.36E-137 transposed
Chy04g00985 Chy-Chr4:14478408 Chy02g02401 Chy-Chr2:27765988 3.95E-34 transposed
Chy06g00736 Chy-Chr6:5022563 Chy02g02401 Chy-Chr2:27765988 1.46E-38 transposed
Chy06g01144 Chy-Chr6:10026780 Chy02g02401 Chy-Chr2:27765988 1.92E-167 transposed
Chy06g01797 Chy-Chr6:21574943 Chy02g02401 Chy-Chr2:27765988 1.62E-28 transposed
Chy12g01483 Chy-Chr12:18727904 Chy02g02401 Chy-Chr2:27765988 1.25E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02401 - - csv:101213424 933.324