Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02411 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGCCCACATCTTCACCATCATCAAAACCACCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGTTGCCGTCGTTACTGGACGAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACCAAACGCTCTTCTTCTTCTAAATCTAAGTCTAACTCCTCCGACGCAGTGGCTACTCCTCCTCCACCACCTCCGCCTCCTCTTCCTCTTCCACTTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCAACAACTACGACCGCTGCGGCGGCGGCGGCAGCGGCAGCGACTGAGGCTGTGTCGGCTCCGTCATCTAATTCGGCATCGGGTTTATTGAACATACATGATACGAAATTGTTCACTGGTTCATCGACGACAAATACAAACCCTAATTTCGAAGTTCCGGACTGCGGGATTTTCTCGGAAATCGGAAGCTTCACCAGCTTGATCACATCGTCTAACGAGACATTAGCGTTTGGATTTGGTAATATGGCGGACGTGACGGCGTTTGCGATGAATAATCACCATCAGTTTCAAAATCAGACGGCGAACCAATGGCCCCCGCCGCCGCCGCCGTCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGGTATGACGGACAGCAGCGGCGGCGGAGGAGGAGGAGGGTATATGGGTCAAACGGCTCAAGTGGATCCGAATAGCAGATCAAACAACATTGGATTTGGAGCGTTAGATTGGCAATCGAACGGTGATCATCAAGTCTTGTTTGATTTACCCACAGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAATGATCAAGACCAGCCGAATCTGTACCTTCCGTAA 1008 50.2 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPPPPPPLPLPLRDRKSTSHSSSESSSLTATTTTAAAAAAAAATEAVSAPSSNSASGLLNIHDTKLFTGSSTTNTNPNFEVPDCGIFSEIGSFTSLITSSNETLAFGFGNMADVTAFAMNNHHQFQNQTANQWPPPPPPSQRMMNVNDELKMQGMTDSSGGGGGGGYMGQTAQVDPNSRSNNIGFGALDWQSNGDHQVLFDLPTAVDQAYWSQNQWNDQDQPNLYLP* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27829988 27830995 - Chy2G046780.1 Chy02g02411 221859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02411 335 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Chy02g02411 335 MobiDBLite consensus disorder prediction 265 287 - -
Chy02g02411 335 MobiDBLite consensus disorder prediction 1 26 - -
Chy02g02411 335 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Chy02g02411 335 MobiDBLite consensus disorder prediction 81 139 - -
Chy02g02411 335 MobiDBLite consensus disorder prediction 105 120 - -
Chy02g02411 335 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 9 325 - -
Chy02g02411 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 325 IPR045174 GO:0003700|GO:0006355
Chy02g02411 335 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02411 Chy-Chr2:27829988 Chy02g00288 Chy-Chr2:1885390 3.33E-35 dispersed
Chy12g01474 Chy-Chr12:18675184 Chy02g02411 Chy-Chr2:27829988 2.05E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17598 PF02701 zf-Dof 4.60E-33 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02411 - - csv:101212701 544.658