Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02418 ATGGCTGTGGTGGCGCCGCTATTCTCCGGCTGCCACCGCTCTCCGATCATGTATAAACCAACTCCACCTCCAACTCCAACTCCCGTATCAATTTTAAAAAATTCCCTTCTTTCAACTTCAACTCCAAAATCTTCGTACTTTTTTGTCTCTGCTCGAACTCAATCCCATCAATCTCGATCCATCAACCCGGTTTCTCAGCTCTCGCTTTCCAAGCTCTGTGAAGCGGGTGATCTCAATGGAGCTCTCGATTTTCTTCAGAGAGCCTGGAAGAACAATGCTGGGTATGATTTGGCTCAGAGAAAAGAGGCTATGGGTATGTTATTGCAGAAATGTGGGCAGTATAAAAACGTCGAAATTGGCCGGAAACTTGATGAAATGTTGTGTTTTTCCTCTCAGTTCAGCGGCGACTTTGTCCTCAATACCCGTCTCATCACTATGTACTCCATTTGTGGATATCCTTTGGAATCTCGATTGGTCTTTGATCGTTTGCTGAATAAGAATTTGTTTCAATGGAATGCACTTGTTAGTGGGTACGTTAGAAATGAACTGTACGACGAGGCAATTCACACTTTCATTGAGTTGATATCGGTAACTGAATTTCAACCTGATAATTTTACATTTCCTTGCTTGATTAAGGCTTGTACTGGGAAATGTGATGTTCATTTGGGAAAATCGGTTCATGGGATGGCGGTGAAAATGGGGTTGATCATGGATTTGTTTGTGGGTAATGCGATGATTGCACTTTATGGGAAATGTGGGTTTTTAGACGAAGCCGTCGAGGTGTTTGATAAAATGCCTGAACAAAACTTGATCTCTTGGAATTCGTTGATTCGTGGGTTTTCTGAGAATGGATTTTGGCTGGAAGCTTATAGGGCGTCTAGAAGTCTTTTGGAGAGTGGCGATGGATTGATTCCAGATGTTGCTACAATGGTAACTCTGTTGCCTGTGTGTTCAGGAGAAGGAAATGTCGATATGGGAATGGTGATTCATGGGATGGCAGTGAAACTGGGGCTTGTTCATGAACTAATGGTGTGTAATGCTTTGATTGACATGTACTCAAAATGCGGTTGCTTATCAGAAGCAGCGATTTTATTTCGGAAGATTGAGAACAAAAGTGTAGTTTCTTGGAATTCCATGATTGGTGCATATTCTAGGGAAGGATTCGTATTGGAAACATTTGATCTCTTGAGAAAGATGTGGATGGAAGAAGAAATGATGGAAGTAAATGAGGTCACCATTTTGAATTCGTTACCTGCTTGTTTGGAAGAAACTGAACTCTTGAGTTTGAGGGCACTTCATGGATATTCACTTAGACATTCGTTTCAATACAAAGAATTGATAAATAATGCGTTTATAGCCGCCTATGCAAAGTGTGGATCGTTGGTTTCTGCTGAGCACGTCTTCTTTGGAATGAATACGAAGTCAGTGAGCTCTTGGAATGCAGTCATTGGTGGACATGCTCAAAATGGTGATCCGAGAAAAGCTTTAGACTTTTATTTTGAGATGACACGTTTGGGCATTCTTCCTGACAATTTTAGCATTGTTAGCCTACTATTGGCTTGTGGCCGTTTGGGACTTCTACAATATGGCAAAGAGATACATGGATTTGTGCTAAGGAATGGGTTAGAGATGAATTCATTTGTTGCTGTCTCCTTGCTATCACTTTATTTCCATTGTTCTAAACCTTTCTACGGCAGAACTTACTTTGAAAGGATGGGAGACAAAAACTCAGTGTGTTGGAATGCGATGCTTTCTGGTTATTCTCAAAATGAACTTCCAAACGAAGCTCTCTCTCTGTTTCGTCAAATGCTTTCGGACGGACTTGAACCTGATGAGATTGCCATAGTGAGTATTCTTGGGGCTTGCTCACAGCTATCAGCTCTTGGTCTCGGAAAAGAAGTTCATTGCTTTGCCTTAAAAAACAGTCTAACGGAAGACAATTTTGTTGATTGTTCGCTCATGGACATGTACGCCAAAAGCGGCTTTTTGGGACATTCTCAACGAATATTTAACAGGTTAAATGACAAAGAAGTGGCTTCATGGAACGTCATGATCACAGGATTTGGTGTTCATGGACAAGGTAACAAGGCTGTGGAGCTATTTGAGGATATGCAAAGATCAGATAAGCAACCTGATAGGTTCACTTTTCTAGGAGTTCTTCAGGCATGTTGTCATGCTGGATTGGTGTCAGAAGGGCTGTATTATCTAGCTCAAATGCAAACTTTGTACAAACTAGAGCCAGAACTCGAGCACTATGCCTGTGTGATCGACATGCTCGGTAGAGCAGGCCGACTAAACGAGGCATTAAGCTTCATAAACGAAATGCCCGAAGAACCAGATGCTAAAATCTGGAGCTCATTGCTCAGTTCTAGTATAACTTATGTTGATCTAGAAATGGGAGAGAAGTTTGCTGAAAAATTGTTAGCACTAGAAGCAAACAAAGCTGACAGCTATATTTTACTCTCTAACTTGTATGCAACAGCAGGAAAATGGGATGTTGTGCGAATGGTGAGACAGAAAATGAAGGATCTCAGCCTTCAGAAAGATGTTGGGTGCAGTTGGATTGAACTTCGAGGTAAAGTCTATAGTTTTATAGCTGGGGAAAACTCGAATCCAAGTTCAGACGAGATACGAAAGATGTGGAATAGATTGGAGAAACAGATAGTGGAAATTGGGTACACACCTGATTGTAGTTGTGTTCTTCATGAATTGGAAGAGGTGGAAAAGAGGAAGATATTGAAAGGGCATAGTGAGAAGGTTGCAATTTGTTTTGGGTTCTTAAACACTAAAGAAGGAACTACATTGAGAATCTCCAAGAATCTAAGAATTTGTAGAGACTGTCACAATGCAGCAAAGTATATAAGTAAAGCTGCTAAAAGAGAAATTGTTATTAGAGACAACAAGCGTTTTCATCACTTCAAAAATGGGATTTGTTCATGTGGAGATTACTGGTAG 2955 40.91 MAVVAPLFSGCHRSPIMYKPTPPPTPTPVSILKNSLLSTSTPKSSYFFVSARTQSHQSRSINPVSQLSLSKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCFSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFIELISVTEFQPDNFTFPCLIKACTGKCDVHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVEVFDKMPEQNLISWNSLIRGFSENGFWLEAYRASRSLLESGDGLIPDVATMVTLLPVCSGEGNVDMGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVLETFDLLRKMWMEEEMMEVNEVTILNSLPACLEETELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVSAEHVFFGMNTKSVSSWNAVIGGHAQNGDPRKALDFYFEMTRLGILPDNFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIVSILGACSQLSALGLGKEVHCFALKNSLTEDNFVDCSLMDMYAKSGFLGHSQRIFNRLNDKEVASWNVMITGFGVHGQGNKAVELFEDMQRSDKQPDRFTFLGVLQACCHAGLVSEGLYYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALSFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKNGICSCGDYW* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27895722 27898676 - Chy2G046850.1 Chy02g02418 221866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02418 984 Pfam PPR repeat 752 777 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 171 195 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 449 473 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 374 400 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 345 371 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 243 269 IPR002885 -
Chy02g02418 984 Pfam PPR repeat 271 290 IPR002885 -
Chy02g02418 984 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 325 420 - -
Chy02g02418 984 Pfam PPR repeat family 474 521 IPR002885 -
Chy02g02418 984 Pfam PPR repeat family 677 725 IPR002885 -
Chy02g02418 984 Pfam PPR repeat family 575 622 IPR002885 -
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 38 218 IPR011990 GO:0005515
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 331 428 IPR011990 GO:0005515
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 429 529 IPR011990 GO:0005515
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Chy02g02418 984 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 132 323 - -
Chy02g02418 984 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 423 972 - -
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 647 881 IPR011990 GO:0005515
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 711 IPR002885 -
Chy02g02418 984 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 423 972 - -
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 202 IPR002885 -
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Chy02g02418 984 Pfam E motif 794 856 IPR046848 -
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 578 612 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 374 401 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 478 510 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 680 712 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 752 777 IPR002885 -
Chy02g02418 984 TIGRFAM PPR: pentatricopeptide repeat domain 243 269 IPR002885 -
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 530 642 IPR011990 GO:0005515
Chy02g02418 984 Gene3D Tetratricopeptide repeat domain 219 330 IPR011990 GO:0005515
Chy02g02418 984 Pfam DYW family of nucleic acid deaminases 892 984 IPR032867 GO:0008270
Chy02g02418 984 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Chy02g02418 984 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 325 420 - -
Chy02g02418 984 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 132 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02418 - - - csv:101211493 1883.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02418 Chy-Chr2:27895722 Chy06g00269 Chy-Chr6:1800931 8.08E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26