Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02419 ATGGCGAAGCTGCTTCTCCATCTTCAAGCTCCTCATCTCGCTTCCTCCTTCAATCACCGAACCCTCTCATTCATAATCTCCAACTCCAACTCTTCTTCTTCCTCCTTACAATGCCGTTTCGCTCTCCCTCTCTCCTCCTCTTCTTCTTTACGCCGCTGCTTCTCTCTTCGAGCATTCGACGACAATGCACCAGAGACCAAACGCGTTGAAAAAGAAGAAACAGACGCTTCAAACGAGGCTCCGATGAGTAGCGACGGCGTCAGGACTCGCGATGAGGATTATCCAAGTGGAGAGTTTGAGTTCCAGAAATTTGGACCGTGGAGGAGCTTTTTGGTTAAGCTTAAGATGCTGGTGGCTTTTCCTTGGGAGCGCGTCCGCAAGGGAAGTGTCTTGACTATCAAATTGCGAGGGCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAAAACTTTGTCAAAGCTGCATACGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTCAATTTCAAAAAATCAGGTAAGTTTGTTGTTGCCTATATTCCTACATGTCAAGAGAAAGAGTACTACCTGGCATGTGCATGTGAGGAAATATATGCCCCGCCAAGTGCTTATGTTTCTTTGTTTGGTCTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAGTAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGGGATCAACTAGCACGGAGAAATATGTCAGAAGAAAATTGTGAAATGTTGACGACATTGCTCGATAACATCTATGGCAACTGGCTGGATAAAGTTTCTTCAACAAATGGAAAGAAAAAAGATGATGTTGAAAACTTCATTAATGAAGGAGTGTACCAAATTGAAAAACTAAAAGAAGATGGCTGGATCACCAACATACAGTACGAGGATGAGGTTCTCTCTATGCTAAGTGAAAGACTTGGTCTGCCGAAGGACAAAAAGGTTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATCAGAGCTGGAGGAAGCATTACTCGTGTAAGAAGTCCTTTAAGTGTTCCTAGTTCTGGTATTATTGGGGAGCAATTCATTGAGAAGATTCGAACTGTTAGAGAGTCGAAAAGATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGCGATGCTCTGGCTTCTGATTTGATGTGGAGAGAAATCAGACTTCTTGCTGCATCAAAACCTGTTGTTGCATCCATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTTGCAGAAGATCTAACCTTAACTGGTTCTATCGGAGTTGTCACAGGGAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATTTCAAGGGGAAGGTTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGACCGGATGAAGCAGAACTCTTTGCCAAATCTGCACAAAATGCGTACAAGCAATTTCGGGACAAAGCAGCCTTTTCCAGATCTATGACTGTGGATGAGATGGAGAAAGTTGCACAAGGAAGGGTTTGGACCGGTAAAGATGCAGCATCCCGTGGTTTAGTGGATGCTATTGGTGGCTTTTCTCGGGCTGTTGCAATAGCAAAACTAAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCACGACCGTCGCCAACGCTACCGGAGATATTAAGCGGAGTAGGGAGTACAATTATTGGAGTTGACAGGACAATGAAGGATCTGCTCCAAGACCTTGCTTTGGGAGAAGGAGTTCAAGCTCGTATGGAAGGGATTATGCTGCAGAGAATGGACGGATTTTCTTATGGTAATCCCATACTTAATTTCATTAAAGATTACTTCACTTCCCTCTAA 2040 43.82 MAKLLLHLQAPHLASSFNHRTLSFIISNSNSSSSSLQCRFALPLSSSSSLRRCFSLRAFDDNAPETKRVEKEETDASNEAPMSSDGVRTRDEDYPSGEFEFQKFGPWRSFLVKLKMLVAFPWERVRKGSVLTIKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGKFVVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYGNWLDKVSSTNGKKKDDVENFINEGVYQIEKLKEDGWITNIQYEDEVLSMLSERLGLPKDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSVPSSGIIGEQFIEKIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAEDLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAVAIAKLKANIPQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTMKDLLQDLALGEGVQARMEGIMLQRMDGFSYGNPILNFIKDYFTSL* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27900179 27908689 - Chy2G046860.1 Chy02g02419 221867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02419 679 Gene3D - 523 647 - -
Chy02g02419 679 SUPERFAMILY ClpP/crotonase 116 335 IPR029045 -
Chy02g02419 679 Gene3D - 374 522 - -
Chy02g02419 679 Pfam Peptidase family S49 196 345 IPR002142 GO:0006508|GO:0008233
Chy02g02419 679 Pfam Peptidase family S49 447 597 IPR002142 GO:0006508|GO:0008233
Chy02g02419 679 PIRSF Protease_4_SppA 78 679 IPR004634 GO:0006465|GO:0008233|GO:0016021
Chy02g02419 679 CDD S49_SppA_67K_type 131 344 - -
Chy02g02419 679 PANTHER PROTEASE 4 33 678 - -
Chy02g02419 679 MobiDBLite consensus disorder prediction 65 90 - -
Chy02g02419 679 Gene3D - 128 364 - -
Chy02g02419 679 SUPERFAMILY ClpP/crotonase 367 584 IPR029045 -
Chy02g02419 679 CDD S49_Sppa_N_C 378 593 IPR002142 GO:0006508|GO:0008233
Chy02g02419 679 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 402 592 IPR004635 GO:0006508|GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02419 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1285.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32