Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02425 ATGGCTCAAGATACGTCTCCTAGCATCGAATCACCTCGGAAGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGTTAGTTAAGAAGAAGGACTCGAATCGATATGAGATCCTTCCAATTCAGGATCCTCTTTCATTTGAGAAAGGATTTTTCATTGTAATACGTGCGTGCCAGTTGCTGTCTCAAAAGAACGATGGGATAATTCTAGTAGGAGTGGCAGGGCCCTCTGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATTCCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATCGATGGCAATTTTGATGACCCACGTCTAACGGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAATCTGTCCAAGTTCCTATTTATGACTTCAAGACAAGTAGTCGCGTGGGCTACAGGGTTGTTGAAGTTCCCGAGTCACGAATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTACGTCCGTTGCTAGATCTTCGTGTATCAGTCACTGGTGGTGTTCATTTTGACTTAGTGAAAAGGGTACTACGAGATATTCAACGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTTTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACCGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACTGGTTTCCAGAATCCTACTTACATTCTTAAGTCAACGAAAGCAGTAGCCGTGGATCAAATTAAGGCTGTTATATCTGAAAATCACAATGAGTCTACTGAGGAAACTTATGACATTTACCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATTTCACCTAGAATAACTTTTGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGTTACACAATTGCAACTATACTTAAAAGAAGCAGTCACATATTCTCTGATGACAAGGTGTGTATAAAGATCGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCATGTTAAATACGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTACATTGAACAGATACAGCTAGAGAAGCTTGTGAATGATGTTATGGCCTTGCCAGATGATTTAAAAACGAAACTCAGCATAGACGATGAGTCACTTTCGAGTCCAAAGGAGGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCTCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAAATTTCTACCCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCCAAGATATGTACCAGAAAAATTTCTGCTAGTCAGCAAAACTTGGTTTCACAATCCGATGCGTGTAACAACGGCTCTGGAGCAACTTCAATTTTCATATCCGGCTTGAGCAACGGTGCCTTAACTGGATCGCTACTCCCTCATTCTTCATCGTCCTCCCAATTAGCCAAGGAATCTCCCGTGCTAGAAGAGATACAAAACATAGCACGAGCGCAACGTCAGATTATTCTCCAAGTTGACAATTTGAGCAATCTTCTCCGAGAGCACTCGAGCGAGAGGAGTCGCCGTGAAAAAGCTGACGATGAAGGGAGGTGGAGGATTACTGATCTTGAATCAATCAGCACCCCAGTTTTGCTAACACTTGCAATTGTTTCTCCTTCAGCGACGCTTGAACAGCTTCATCATCTTATCAAAACTCAACCATGCCGACCGTTAGCGTCGGAAGAGATCTTCTTTTTGCTGCCATTGGAAGAACTTACAGAAGAGTTTGAAGAGCTGTGCTTTAGGTTTGGAATTGAGCTTGATGACGTTACGACGGAGAAGGCGATTATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAATAGATACGATTTGCTATGTCTGGAAGGGCTGGCACAAGCACTGCGCATTTTTAATAAGCAGGAGGACACTCCCAGATATACATTAGCCAATATCAGCAAAGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCATGATCCGTCCTTTCATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGACAGTTTTATTGATTTGCAAGAGAAACTTCATCAGAACATATGTCGACGGAGAAGTCTCGTTGCCATTGGAACTCACGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCTACAGCTATAAACTTTGTGCCACTGAAACAGGCAAAAAATTTCAGAGCCGATGAGCTAATGGAGTTCTATAAATCAGATTTGAAGCTAAGGAAGTACGTGCCCATTATAGAAAAGTCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCCCCCATTATCAATAGTGCACATTCAGCTATTACTTTGAAGACAAAGAATGTGTTTATTGAATGCACAGCAACTGATCTGACAAAGGCCAATATCGTGTTGAATACTATGGTAACTATGTTTTCAACGTTGTGCAAAAAGAAGTTTGAAATTGAACCAGTCGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAAATATCCCTCTACAATATGGAAGTTTCTCTGTCTTATATCAATAAATGTATTGGCGTCTCATTGGAGACAAAAGAGGTTATCAGTTTGTTAAATAGGATGCAATTGCATGCTGAACCGTCAGTATCCGGTGACAAATCTAGTATAACTATATCTGTGCCTCCAACAAGGAGTGATGTGCTACACCCATGTGATGTCATGGAGGATGTTGCTATTGCTTACGGGTATAATAACATCCCGAAGAGTAAACCAGCATCTTTGCAGCCTCTAACATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATTCTATGCTCTTATAAAGAGAACTTTGCCATGTTAAAGCGTGAAGATGATAAATCTACTGCAGTTGTCATTGGAAATCCCCGTTCAACTGATTTTGAGGTTGTCCGAACGAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGGCATAATAAGGATCACCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTACTGGATGATTCAAAAGATGTTGGCGCTAGAAATCATCGTCATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTCGAATTGATTCATGGTTTGGTCGACCGAATTATGGAAGTTGTGGGAGTTCCGTTTGTCTCAGTTGGCGATGATACTGGGTATTACATAAAATGTTCAGACAACCCGGAGTTTCTTACTGGTAGACAAGCTCACATCATTTATAAAGGAAAGAAAATTGGCACTTTCGGCATTGTTCATCCCGAGGTTTTGGAGAACTTTGACATTCCCGATCCATGTTCTTTAGTTGAAGTTAACATGGAGAGCTTTTTATAG 3771 41.1 MAQDTSPSIESPRKRSGLLRDQVQLVKKKDSNRYEILPIQDPLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKSVQVPIYDFKTSSRVGYRVVEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVAVDQIKAVISENHNESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDKVCIKIDWLEQLNRKYIQVQGKDRVHVKYVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPVLEEIQNIARAQRQIILQVDNLSNLLREHSSERSRREKADDEGRWRITDLESISTPVLLTLAIVSPSATLEQLHHLIKTQPCRPLASEEIFFLLPLEELTEEFEELCFRFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEDTPRYTLANISKESMHKMHVKPETSMIRPFIVCAVLRDMTFDEAIYDSFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQAKNFRADELMEFYKSDLKLRKYVPIIEKSPVYPILYDRNRTVLSLPPIINSAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPEISLYNMEVSLSYINKCIGVSLETKEVISLLNRMQLHAEPSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNIPKSKPASLQPLTLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDSKDVGARNHRHLAALYCGANSGFELIHGLVDRIMEVVGVPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL* 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27934909 27948794 + Chy2G046920.1 Chy02g02425 221873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02425 1256 ProSiteProfiles B5 domain profile. 968 1047 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Chy02g02425 1256 SMART B3_4_2 783 945 IPR005146 GO:0003723|GO:0004826
Chy02g02425 1256 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Chy02g02425 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 237 IPR027417 -
Chy02g02425 1256 Gene3D - 764 969 IPR020825 -
Chy02g02425 1256 PANTHER URIDINE KINASE 7 652 - -
Chy02g02425 1256 Pfam tRNA synthetase B5 domain 973 1042 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Chy02g02425 1256 Gene3D Bira Bifunctional Protein; Domain 2 1056 1256 IPR045864 -
Chy02g02425 1256 Gene3D - 670 754 - -
Chy02g02425 1256 Gene3D - 67 274 IPR027417 -
Chy02g02425 1256 SUPERFAMILY Putative DNA-binding domain 972 1046 IPR009061 -
Chy02g02425 1256 SUPERFAMILY Putative DNA-binding domain 682 756 IPR009061 -
Chy02g02425 1256 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 652 - -
Chy02g02425 1256 Pfam Phe-tRNA synthetase beta subunit B1 domain 685 754 IPR040659 -
Chy02g02425 1256 Pfam CYTH domain 270 405 IPR023577 -
Chy02g02425 1256 Gene3D - 971 1045 - -
Chy02g02425 1256 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 700 1256 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Chy02g02425 1256 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Chy02g02425 1256 Coils Coil 608 628 - -
Chy02g02425 1256 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 1045 1252 IPR041616 -
Chy02g02425 1256 PRINTS Uridine kinase signature 189 199 - -
Chy02g02425 1256 PRINTS Uridine kinase signature 66 83 - -
Chy02g02425 1256 PRINTS Uridine kinase signature 225 238 - -
Chy02g02425 1256 PRINTS Uridine kinase signature 133 148 - -
Chy02g02425 1256 Pfam B3/4 domain 788 945 IPR005146 GO:0003723|GO:0004826
Chy02g02425 1256 Coils Coil 501 528 - -
Chy02g02425 1256 SMART B5_2 970 1042 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Chy02g02425 1256 CDD PheRS_beta_core 1058 1255 IPR041616 -
Chy02g02425 1256 SUPERFAMILY CYTH-like phosphatases 262 408 IPR033469 -
Chy02g02425 1256 CDD UMPK_like 68 240 - -
Chy02g02425 1256 SUPERFAMILY Class II aaRS and biotin synthetases 1039 1255 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02425 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101210506 1219.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02425 Chy-Chr2:27934909 Chy10g01088 Chy-Chr10:15972642 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39