Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g02440 | ATGGCGAGTGCACCAACTGCTGGCGGAATATCAAAGGTTTTGTCCAATCCATCACCGGACTCCCCCTCCGATGTCCCCGACGTTGTGGTTCAGGTCATTGATCTCAAGGCAACGGGAAATCGCTATATGTTTACTGCTAGCGATGGTGACATGAAGCTTAAAGCTATTCTTCCATCAAATCTGACTTCTGACGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCAAACAAGTCAGAAAAGTATTTAATCGTGACAAAATGTGAGGTGGTTTCTCCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAGACAGAGGAAGCAGGTACTATTTTGAAACCGAAGGTAGAGCTTGATGATAAGAGCACATTTAACAATGGATCTGGTATTATTCTGAAACCAAAGCAAGAATTGGTCGCTAAATCAGCTGCTCAGATTGTACACGAGCAGCGTATGAATATGGCACCAGCTGCCCGGATGTCCATGACAAGGCGAGTTCAGCCCCTTGTCTACTTAAACCCTTACCTGGGAGATTGGACCATCAAAGTTCGTGTTACTGATAAGGGAAACCTGCGTACATACAAAAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAGTTTGCCCTCGGCAAAGTCTATTATGTTTCCAGGGGAACTTTGAAAGTTGCCAATAAGAAATTCAAGACAGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGACGAGGTCAGCAATGAAGCTGCTTTTGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTCGTTGATGTAATTGGAGTTGTTCAAAATGTTTCTTCTACAATGAGCATTCGAAGGAAACTCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAAACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCAACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATTGCATTGAAATATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACAATAAGCAGGAGCTCAATTACAATAAACCCAGACACAAAGGAAGCACATGATTTGAGATCATGGTATGACTCTGAAGGTAAAGCCGTATCCATGTCTTCTGTAAGCTCCGGCCTGAGTCCATCAACCAAGAGCGGTTCTAGGTCCATGTACTCTGACCGGATTTCCTTATCTCATATACTCGAAAACAAATCTTTGGGAGAAGAAAAGCCCACGTTCTTCAGCATTAGAGCATATGTCAGCTTTATCAAACCCGATCAAACAATGTGGTATCGTGCTTGCAAAACATGCAATAAGAAGGTAACTGAAGCCATCGGATCTGGATATTGGTGTGACAATTGCCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGGGTATCTGATGCAAGCGGTGAAGCTTGGGTCTCTACATTCAACGAAGAAGCAGAGAGAATTATGGGATGCTCAGCTGATGAACTTGATCAGCTCAAATCGCAGATTGGTGAGGAGAATTCATATCAACTTAAACTCAAAGAAGCCACATGGGTTCCCCACTTGTTTCGAGTTAGCGTTTCTCAGAACGAATACAACAATGAGAAGAGACAAAGGATCACCGTCAGGTCAGTTGCTCCAGTTGATTTTGCTGCTGAGTCCAGATTTTTGCTAGAAGAGATAGCAAAAATGAAGGCTTCCTAA | 1872 | 41.72 | MASAPTAGGISKVLSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTASDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKSEKYLIVTKCEVVSPALEKEVKTEVKTEEAGTILKPKVELDDKSTFNNGSGIILKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFALGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNFVKIDMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKLNNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSITINPDTKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGEEKPTFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS* | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28056017 | 28059440 | - | Chy2G047070.1 | Chy02g02440 | 221888 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g02440 | 623 | Pfam | OB-fold nucleic acid binding domain | 190 | 275 | IPR004365 | GO:0003676 | |
Chy02g02440 | 623 | CDD | RPA1_DBD_B | 312 | 418 | - | - | |
Chy02g02440 | 623 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Chy02g02440 | 623 | Gene3D | - | 432 | 620 | IPR012340 | - | |
Chy02g02440 | 623 | PANTHER | REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED | 7 | 618 | - | - | |
Chy02g02440 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 107 | IPR012340 | - | |
Chy02g02440 | 623 | Gene3D | - | 290 | 431 | IPR012340 | - | |
Chy02g02440 | 623 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 103 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Chy02g02440 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 446 | 620 | IPR012340 | - | |
Chy02g02440 | 623 | Gene3D | - | 176 | 285 | IPR012340 | - | |
Chy02g02440 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 295 | 424 | IPR012340 | - | |
Chy02g02440 | 623 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 7 | 618 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Chy02g02440 | 623 | Coils | Coil | 538 | 558 | - | - | |
Chy02g02440 | 623 | CDD | RPA1_DBD_C | 454 | 619 | IPR013955 | - | |
Chy02g02440 | 623 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 6 | 619 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Chy02g02440 | 623 | Pfam | Replication protein A OB domain | 308 | 404 | IPR031657 | - | |
Chy02g02440 | 623 | CDD | RPA1_DBD_A | 179 | 282 | - | - | |
Chy02g02440 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 181 | 286 | IPR012340 | - | |
Chy02g02440 | 623 | Pfam | Replication factor-A C terminal domain | 467 | 613 | IPR013955 | - | |
Chy02g02440 | 623 | Gene3D | - | 6 | 113 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g02440 | Chy-Chr2:28056017 | Chy05g01462 | Chy-Chr5:18406705 | 1.02E-99 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g02440 | K07466 | - | csv:101208545 | 1171.76 |