Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02443 ATGGAGATGGGGAGATGTGGTATGTCATTCAATCCAATTGCCGCTTCAGTTCAGCCAATTGAAGGCCCTACACTTTCCAAATTCAACAACACATCACCATCTAAAGAGGTGTTGGAACTGTGGAGAAGTGCAAATGCAGTATGCTTTGATGTTGATAGCACAGTTTGTGTAGATGAGGGCATTGATGAATTAGCAGATTTTTGCGGAGCTGGAGAGGCGGTTGCGGAATGGACTGCTAGGGCAATGGGTGGTTCTGTTCCGTTTGAGGATGCTTTGGCTGCTAGACTTTCTTTGTTTAACCCTTCTCTTTTCCAAGTTGAGGAATTTCTTGCTAAGAGACCTCCAAGGCTTTCTCCAGGTATTGATGAGTTAGTTAAAAAGCTAAAAGCTAACAGCATTGATGTATATCTGATTTCGGGAGGCTTTCGTCAAATGATCAATCCTGTTGCATCAATTCTTGGCATTCCACATGAGAATATTTTTGCCAACCAATTGCTTTTTGGAAACAATGGTGAATTTGTGGGGTTCGACAAAAATGAGCCTACTTCAAGGAGTGGGGGAAAGGCAGTTGCGGTACAGCAACTGAGGAAGGCTCGTGGATACAAGACATTGGTCATGACTGGGGACGGTGCAACGGATCTCGAGGCTCGTAAACCTGGAGGCGCTGACTTGTTTATATGTTATGCTGGTGTTCAACTTCGAGAAAACGTCGCTTCAAAAGCTGACTGGCTGCGGGTCCTTTATTCTTCACCTTCAGAGCTATTTCCAACAACCGCCGCGGTCACGATAACGACACCTTCAAAGCCTCCTCATATTCTTCGATTGGCTCCTTTTCTGGGACCTCCTGATTTCTCAATCTCCTTTCTGAATTTCAATTTCTTTGACTTGACCCATTATTCACCCTCTTCTTCGAGTTTCTTCATTGGCTTCGTGTACATTCTGTTCGTTATGGGAATTTGCAATTGCGTTAATGGGTTCTGCAGCAAAGAGGGTGTTCTTAAATGGGGCCGCGGGTTGGTTGACTTCAGGGTGAAGGTGTTGCTCAGTTACAACAAGAGGGGAGAATATTATTGTGAAATTTTGCTAGTATCTTTGGCTGTGGAAGTGTGTGCTGGAATGGGCTTGTGGGTAGTTGCAACTGCCGCTGGAGCTGGATGTTTAGCTAAGTATTGGCAGAAACTGTTGAAAGATGGGAATACTTCATCTCAAATGTCTTCTAGGAACTCTAGTAATGGGGAATTAGGATCTCTGGATCATCCCTTCCACCAAACAGAACAAAGAACGAAAGCAAGTGGAGATATGCTTGCTGGTGAAGAAGAGGTTCTGAATGGGAGAGATTATGTTGGGAGTCGATTCAATGTGGCTTCTATTAGTGGTTTTGATTGTGAAAAGATGGATAATTTGGGGAATTGCCAGGAATATAATGGTCTTTCAGTATCCAATTTGCCAATGGAATTATCAACGACAACGAGTAATGATCCTCAAATATTTGGGCATAGAAGTAGTGTAAACGTGAATGTGAATGATAATATGATTGATCAGCTTCCTTGTTCATCTTCTAGAGAATTGAACTGTTTTCGGCCAACTATGAGGAAAATAGGATCTCTTAGACATAAACAGTCTTATGGGAGATTTATTAGACCACTTAGTTCATTAGAAAGTTGTGTGTTGTCTCATCTCTACAAGGATCATGTTGAAATGGAAGAGTACATCCTACATACATTTCAGTCACCATCTAAATCAACTATGAGGCGGTTTGTCGTAAATGACGGAACCCACATAGTCAGCAGGCGAGTTAGAGATTCTTTCAGCGTTCAGGTTGATATGGATGCAAGTAACTTCCGTAAAGAACCATTTATTGGGAAGAACAGGAATGCATATGGGATACCTTTGCTTCCGAAAATACAGTCTTTGAAGACCTCGGAGATGATAGACATCAATGGAGGAAGGAGACAAAGTGGAGCAAGCAGTGCCAGTGAAATGCATAATGAGAAGTTCCTCCATGCAAAAGATCGAATGATTCTATTCTGTCTTGGGATTTCTGTCGGCTTAATTTCCTTCATGCAAAATAAGCGTGAAATAGACAAGCTCAAAGAGTTGTTAAAGCATACTGAGAACTTGGTCCAAGATCTACAAGAGGAACTTGAGATGAAGGATTCTCTGACAGTGAAGGAACTTTCAAATGAGAATTGTGAATCAGTAGGCATATCTGAGAATTCTTTCTTTGGTGGGAAAGACCAGAATCTCAATCCTTCAGCTAAATCTGATGATAAGGAATTATTCAAACCAAAACCCGAAGAGGATTCAGATTCTCTGAGTAAAATTGAAGCTGAGCTTGAAGCAGAACTTCAGAGGTTGGGACTAAATACTGAAACATCGAGTACAGATAAAAGATTCGCTGATCTTCATGAGCTTGATCAAGAATTTACAGTAGATTTTTCTGAAGGTGAGTTGAGAGCTGAGATGATCAGTGAGCTAAGTCCTAAGCTTCAGCAAAATCAAGATGTAAGTGAGCTCACCTCCTCGGGTAACTACACAGTTTCACCTTGGGAGCTTAGTGTTCGACTGCATGAAGTCATCCAGTCAAGGCTTGAAGCACGTGTGAGAGAGCTCGAAACGGCCCTTGAGAACAGTGAGAGGAGACTTCACCGCATTGAAGCCAAGCGAACTGATTCTTGGAAAGAATTCACCCATAAGGAAATGCTACATTCATCTAGTGAAGAAAGCCTAACTGCTCAACCACTTGTTATGAATTTATCAGGAGAAGCTCTAGATGCCTACAACGATGCATATAGTGAGTTAATGGATATTGACGATTCCGAAGAAGAACCTATAGATTCACCTTCAACAGGTGATGAAAGTAAGCATTCAGAAAGGCAAACAACTGTTAACGGTCATCCATTTTCAGTTCAGAATGGGAAAAGAAACGGATCAATCAGCCTGGGTCGAATACTTGTTGAGGAGAAAATGAAAAATTCTTATAAAAAGTTTGGCACAATGAAAGGTGGGTCAAATGAGATAGATGGCAGTGAAGATGAAAGCAGTGATTATGATGATGAGATAGAAAAGCAGTTGATAAAGCAGATTGTTGAGAAAACCAGAATGGGTTCTCCTGTCGTTCGGAATGCACAAAGATGGTTATTTTCGATGGACAAAGATGATGGCTGA 3168 41.67 MEMGRCGMSFNPIAASVQPIEGPTLSKFNNTSPSKEVLELWRSANAVCFDVDSTVCVDEGIDELADFCGAGEAVAEWTARAMGGSVPFEDALAARLSLFNPSLFQVEEFLAKRPPRLSPGIDELVKKLKANSIDVYLISGGFRQMINPVASILGIPHENIFANQLLFGNNGEFVGFDKNEPTSRSGGKAVAVQQLRKARGYKTLVMTGDGATDLEARKPGGADLFICYAGVQLRENVASKADWLRVLYSSPSELFPTTAAVTITTPSKPPHILRLAPFLGPPDFSISFLNFNFFDLTHYSPSSSSFFIGFVYILFVMGICNCVNGFCSKEGVLKWGRGLVDFRVKVLLSYNKRGEYYCEILLVSLAVEVCAGMGLWVVATAAGAGCLAKYWQKLLKDGNTSSQMSSRNSSNGELGSLDHPFHQTEQRTKASGDMLAGEEEVLNGRDYVGSRFNVASISGFDCEKMDNLGNCQEYNGLSVSNLPMELSTTTSNDPQIFGHRSSVNVNVNDNMIDQLPCSSSRELNCFRPTMRKIGSLRHKQSYGRFIRPLSSLESCVLSHLYKDHVEMEEYILHTFQSPSKSTMRRFVVNDGTHIVSRRVRDSFSVQVDMDASNFRKEPFIGKNRNAYGIPLLPKIQSLKTSEMIDINGGRRQSGASSASEMHNEKFLHAKDRMILFCLGISVGLISFMQNKREIDKLKELLKHTENLVQDLQEELEMKDSLTVKELSNENCESVGISENSFFGGKDQNLNPSAKSDDKELFKPKPEEDSDSLSKIEAELEAELQRLGLNTETSSTDKRFADLHELDQEFTVDFSEGELRAEMISELSPKLQQNQDVSELTSSGNYTVSPWELSVRLHEVIQSRLEARVRELETALENSERRLHRIEAKRTDSWKEFTHKEMLHSSSEESLTAQPLVMNLSGEALDAYNDAYSELMDIDDSEEEPIDSPSTGDESKHSERQTTVNGHPFSVQNGKRNGSISLGRILVEEKMKNSYKKFGTMKGGSNEIDGSEDESSDYDDEIEKQLIKQIVEKTRMGSPVVRNAQRWLFSMDKDDG* 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28069934 28080210 - Chy2G047100.1 Chy02g02443 221891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02443 1055 Coils Coil 687 721 - -
Chy02g02443 1055 PANTHER EMB|CAB62613.1 373 1054 - -
Chy02g02443 1055 Coils Coil 861 888 - -
Chy02g02443 1055 Pfam haloacid dehalogenase-like hydrolase 45 219 - -
Chy02g02443 1055 TIGRFAM serB: phosphoserine phosphatase SerB 38 239 IPR004469 GO:0006564|GO:0036424
Chy02g02443 1055 SUPERFAMILY HAD-like 35 246 IPR036412 -
Chy02g02443 1055 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 46 218 - -
Chy02g02443 1055 PANTHER EMB|CAB62613.1 373 1054 IPR040348 GO:0008356
Chy02g02443 1055 MobiDBLite consensus disorder prediction 751 772 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 996 1018 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 399 417 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 961 976 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 737 772 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 940 976 - -
Chy02g02443 1055 MobiDBLite consensus disorder prediction 399 419 - -
Chy02g02443 1055 CDD HAD_PSP_eu 46 243 - -
Chy02g02443 1055 Gene3D Phosphoserine phosphatase; domain 2 54 108 - -
Chy02g02443 1055 Gene3D - 109 247 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02443 - - - csv:101218206 1264.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00330 Chy-Chr7:2677717 Chy02g02443 Chy-Chr2:28069934 2.42E-06 transposed
Chy12g01501 Chy-Chr12:18833485 Chy02g02443 Chy-Chr2:28069934 9.08E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g655 . . Bda06g00523 . . . . Bma12g00966 . . . . . Car11g00184 . . Cpe04g01462 Bhi02g00097 . . . Hepe09g0271 . . Cla06g01541 Cam06g1700 Cec06g1762 Cco06g1761 Clacu06g1667 Cmu06g1613 Cre06g2426 . . Cone13ag0037 Cone19ag0046 . . . . . Blo15g00335 . . Bpe07g00757 . . . . . Cmo11g00208 . . . . . . . . . . . . . . . . . . . . Lsi06g01414 Csa01g00292 Chy02g02443 Cme02g01831
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008897 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34