Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g02446 | ATGGCGTCCGCTAAGCGATGCCATTACGAGGTTCTCGGCCTCCACATCGACTGTACACCTGATGAAATTCGATCGGCGTACCGGAAGCTAGCTCTCCAGCGCCACCCCGATAAGCTCGTCCAGTCCGGTTTGTCACAAGCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCACGCTTACGAGGTTCTTTCCGATCCTAAAGAACGGGCCTGGTACGATTCCCATCGTTCCCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCTAGCTCTGTTGTTCCTAATCTCTTTCCGTTCTTCTCTAATACTGTTTATTCTGGCTATTCCGATTCTGGACGAGGGTTCTATAAGATCTATTCTGACCTTTTTGATAAAATTTATGGGAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTGGATAGTCCGTATACGCAGGTGACTGCGTTTTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAATACGATGTCATGGCCGGTCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAGTTTGTGAAGAAGAGAGATAAAAGGGTGATTGATATGGCTATGAAAAGGAACATGGAAATGGAGAAGAAGAAAGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAGAGGGAGAAGATGGAGAAGCTTAGAACATATGAGGAACCTGATTGGGCAAAGGTTGAGGAAGTTGAGGAGGATGAAGAAGATGTGTTTGAGGAAGAGAATAGGAGAGGGAAAGAGCTGTACTGTGTTTTGTGTGGTAAGAAGTTCAAAAGTGAAAAGCAATGGAAGAATCACGAACAGTCGAAAAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAGTTTGTTGATGAAGGGGAAGGTGAAGAAGAAACTACACTCCAGGATGATGAGGTTGATAAACTAGGGGAGGAGTTCAAGGAAAGTTTTGATATTGAGGAAGAAGAAACCGAAAGTGGGGGTGGACTTAGTGGGAGTGAATACAATGATGTTCATGAAGTTGATAGATCAGATATGGTTGGTGAGGCACTTGGATCAAATGATGACGACGAAAGAGATATTCTTGAAGCAATGGCAGCTGGACTGCGAAATAGGAAAAGTGCAGCTTCAGTGAATCAGCCTGAAGCTTCCCCAGTTAAACCTCATTTTGAAAATGAGAACGATGAGCCAAATCCAGCGGAGTTCGAAAATGGTAAGAGGGGAAAAAAGAGTCGTCGAGCCAAAAAGAAGGGCAAGGGAAACGATGAAGCTATGAATGAAACAGATTCTCGAAATTACAAAACTAACGGAGATGATTCATCACATCAGCAGGATTCCACTTCCAATTCGTTGCATAATGACGAAAATAGTGATAAGGGGGCCAGTGAGTTGGCTAAAGAACAAAGGGCTTCAAGTAAATCCGCCGATCGGAAAGTAGTTGCACAGAATGACCTGAAGATCAACTCTAGATACTCGTCTAAAGGAAAGAAATCCAAGGTAAACTTGCATTCCACAGAACTGTTTTCTTAA | 1677 | 43.59 | MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEMEKKKEEERERKKRLEREKMEKLRTYEEPDWAKVEEVEEDEEDVFEEENRRGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEEETTLQDDEVDKLGEEFKESFDIEEEETESGGGLSGSEYNDVHEVDRSDMVGEALGSNDDDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGKRGKKSRRAKKKGKGNDEAMNETDSRNYKTNGDDSSHQQDSTSNSLHNDENSDKGASELAKEQRASSKSADRKVVAQNDLKINSRYSSKGKKSKVNLHSTELFS* | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28100960 | 28102636 | + | Chy2G047130.1 | Chy02g02446 | 221894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 437 | 457 | - | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 385 | 415 | - | - | |
Chy02g02446 | 558 | Pfam | Zinc-finger double-stranded RNA-binding | 294 | 319 | IPR022755 | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 466 | 487 | - | - | |
Chy02g02446 | 558 | Gene3D | DnaJ domain | 1 | 89 | IPR036869 | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 505 | 523 | - | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 329 | 354 | - | - | |
Chy02g02446 | 558 | PRINTS | DnaJ domain signature | 27 | 42 | IPR001623 | - | |
Chy02g02446 | 558 | PRINTS | DnaJ domain signature | 48 | 68 | IPR001623 | - | |
Chy02g02446 | 558 | PRINTS | DnaJ domain signature | 9 | 27 | IPR001623 | - | |
Chy02g02446 | 558 | PANTHER | DNAJ PROTEIN JJJ1 HOMOLOG | 1 | 551 | IPR044648 | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 306 | 558 | - | - | |
Chy02g02446 | 558 | SUPERFAMILY | Chaperone J-domain | 4 | 98 | IPR036869 | - | |
Chy02g02446 | 558 | Coils | Coil | 230 | 264 | - | - | |
Chy02g02446 | 558 | SUPERFAMILY | beta-beta-alpha zinc fingers | 286 | 339 | IPR036236 | - | |
Chy02g02446 | 558 | SMART | ZnF_U1_5 | 291 | 325 | IPR003604 | GO:0003676|GO:0008270 | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 488 | 504 | - | - | |
Chy02g02446 | 558 | ProSitePatterns | Nt-dnaJ domain signature. | 53 | 72 | IPR018253 | - | |
Chy02g02446 | 558 | CDD | DnaJ | 7 | 65 | IPR001623 | - | |
Chy02g02446 | 558 | MobiDBLite | consensus disorder prediction | 306 | 328 | - | - | |
Chy02g02446 | 558 | SMART | dnaj_3 | 6 | 68 | IPR001623 | - | |
Chy02g02446 | 558 | Coils | Coil | 193 | 213 | - | - | |
Chy02g02446 | 558 | Pfam | DnaJ domain | 8 | 73 | IPR001623 | - | |
Chy02g02446 | 558 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 296 | 318 | IPR013087 | - | |
Chy02g02446 | 558 | Gene3D | Classic Zinc Finger | 280 | 343 | - | - | |
Chy02g02446 | 558 | ProSiteProfiles | dnaJ domain profile. | 7 | 76 | IPR001623 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g02446 | Chy-Chr2:28100960 | Chy06g01141 | Chy-Chr6:9969714 | 1.79E-20 | dispersed | |
Chy02g02446 | Chy-Chr2:28100960 | Chy09g00895 | Chy-Chr9:11717889 | 2.51E-11 | transposed | |
Chy02g02446 | Chy-Chr2:28100960 | Chy10g01164 | Chy-Chr10:16500756 | 2.57E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17601 | PF00226 | DnaJ | 6.80E-21 | CL0392 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g02446 | K09506 | - | csv:101217729 | 935.25 |