Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02446 ATGGCGTCCGCTAAGCGATGCCATTACGAGGTTCTCGGCCTCCACATCGACTGTACACCTGATGAAATTCGATCGGCGTACCGGAAGCTAGCTCTCCAGCGCCACCCCGATAAGCTCGTCCAGTCCGGTTTGTCACAAGCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCACGCTTACGAGGTTCTTTCCGATCCTAAAGAACGGGCCTGGTACGATTCCCATCGTTCCCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCTAGCTCTGTTGTTCCTAATCTCTTTCCGTTCTTCTCTAATACTGTTTATTCTGGCTATTCCGATTCTGGACGAGGGTTCTATAAGATCTATTCTGACCTTTTTGATAAAATTTATGGGAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTGGATAGTCCGTATACGCAGGTGACTGCGTTTTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAATACGATGTCATGGCCGGTCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAGTTTGTGAAGAAGAGAGATAAAAGGGTGATTGATATGGCTATGAAAAGGAACATGGAAATGGAGAAGAAGAAAGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAGAGGGAGAAGATGGAGAAGCTTAGAACATATGAGGAACCTGATTGGGCAAAGGTTGAGGAAGTTGAGGAGGATGAAGAAGATGTGTTTGAGGAAGAGAATAGGAGAGGGAAAGAGCTGTACTGTGTTTTGTGTGGTAAGAAGTTCAAAAGTGAAAAGCAATGGAAGAATCACGAACAGTCGAAAAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAGTTTGTTGATGAAGGGGAAGGTGAAGAAGAAACTACACTCCAGGATGATGAGGTTGATAAACTAGGGGAGGAGTTCAAGGAAAGTTTTGATATTGAGGAAGAAGAAACCGAAAGTGGGGGTGGACTTAGTGGGAGTGAATACAATGATGTTCATGAAGTTGATAGATCAGATATGGTTGGTGAGGCACTTGGATCAAATGATGACGACGAAAGAGATATTCTTGAAGCAATGGCAGCTGGACTGCGAAATAGGAAAAGTGCAGCTTCAGTGAATCAGCCTGAAGCTTCCCCAGTTAAACCTCATTTTGAAAATGAGAACGATGAGCCAAATCCAGCGGAGTTCGAAAATGGTAAGAGGGGAAAAAAGAGTCGTCGAGCCAAAAAGAAGGGCAAGGGAAACGATGAAGCTATGAATGAAACAGATTCTCGAAATTACAAAACTAACGGAGATGATTCATCACATCAGCAGGATTCCACTTCCAATTCGTTGCATAATGACGAAAATAGTGATAAGGGGGCCAGTGAGTTGGCTAAAGAACAAAGGGCTTCAAGTAAATCCGCCGATCGGAAAGTAGTTGCACAGAATGACCTGAAGATCAACTCTAGATACTCGTCTAAAGGAAAGAAATCCAAGGTAAACTTGCATTCCACAGAACTGTTTTCTTAA 1677 43.59 MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEMEKKKEEERERKKRLEREKMEKLRTYEEPDWAKVEEVEEDEEDVFEEENRRGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEEETTLQDDEVDKLGEEFKESFDIEEEETESGGGLSGSEYNDVHEVDRSDMVGEALGSNDDDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGKRGKKSRRAKKKGKGNDEAMNETDSRNYKTNGDDSSHQQDSTSNSLHNDENSDKGASELAKEQRASSKSADRKVVAQNDLKINSRYSSKGKKSKVNLHSTELFS* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28100960 28102636 + Chy2G047130.1 Chy02g02446 221894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02446 558 MobiDBLite consensus disorder prediction 437 457 - -
Chy02g02446 558 MobiDBLite consensus disorder prediction 385 415 - -
Chy02g02446 558 Pfam Zinc-finger double-stranded RNA-binding 294 319 IPR022755 -
Chy02g02446 558 MobiDBLite consensus disorder prediction 466 487 - -
Chy02g02446 558 Gene3D DnaJ domain 1 89 IPR036869 -
Chy02g02446 558 MobiDBLite consensus disorder prediction 505 523 - -
Chy02g02446 558 MobiDBLite consensus disorder prediction 329 354 - -
Chy02g02446 558 PRINTS DnaJ domain signature 27 42 IPR001623 -
Chy02g02446 558 PRINTS DnaJ domain signature 48 68 IPR001623 -
Chy02g02446 558 PRINTS DnaJ domain signature 9 27 IPR001623 -
Chy02g02446 558 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 551 IPR044648 -
Chy02g02446 558 MobiDBLite consensus disorder prediction 306 558 - -
Chy02g02446 558 SUPERFAMILY Chaperone J-domain 4 98 IPR036869 -
Chy02g02446 558 Coils Coil 230 264 - -
Chy02g02446 558 SUPERFAMILY beta-beta-alpha zinc fingers 286 339 IPR036236 -
Chy02g02446 558 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Chy02g02446 558 MobiDBLite consensus disorder prediction 488 504 - -
Chy02g02446 558 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Chy02g02446 558 CDD DnaJ 7 65 IPR001623 -
Chy02g02446 558 MobiDBLite consensus disorder prediction 306 328 - -
Chy02g02446 558 SMART dnaj_3 6 68 IPR001623 -
Chy02g02446 558 Coils Coil 193 213 - -
Chy02g02446 558 Pfam DnaJ domain 8 73 IPR001623 -
Chy02g02446 558 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Chy02g02446 558 Gene3D Classic Zinc Finger 280 343 - -
Chy02g02446 558 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02446 Chy-Chr2:28100960 Chy06g01141 Chy-Chr6:9969714 1.79E-20 dispersed
Chy02g02446 Chy-Chr2:28100960 Chy09g00895 Chy-Chr9:11717889 2.51E-11 transposed
Chy02g02446 Chy-Chr2:28100960 Chy10g01164 Chy-Chr10:16500756 2.57E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17601 PF00226 DnaJ 6.80E-21 CL0392 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02446 K09506 - csv:101217729 935.25