Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02452 ATGGCTAAATCGGCCCTTGAGACTTACGGCCATGATCTCGTGGAAAAAGCAGAGAAACAAACACTCGATCCAATCTTCGGCCGTCACAAAGAAATCCGCCGTCTCCTAACCATCCTCTGCCGCAAAACCAAATGCAACCCCATCCTAATAGGCGAACCCGGCGTCGGAAAAACAGCTATCGTCGAAGCACTAGCACAGAAAATCGCCGCCGGAAATGTCCCGGCCAAGCTCTCCGGCGCAAGAATAGTAGAACTGGACATGGGAGCCATAATGGCCGGAACAATTTGGAGAGGACAATTGGAAGAGAGATTGAAGGATGTGATGACGGAAGTGAAAGGATCGGAAGGAAAAGTGATAGTGTTTATCGACGAAATTCATATGTTGGTCCGAAGTGATTATCAGGGAACCGCAGCGGAGATTCTGAAACCGGCGCTGGGAAGAGGGAATTTCCGGTGCATCGGAGCGACGACGTTGAAGGAGTACAAAAGGTATATTGAGAAAGACGGAGCATTGGCGAGGAGATTTAAACAAGTTTATGTGAGTGAACCAAGTGTTGAAGATTCGATTAACATTCTCAGAGCTTTGAAGGAGAGATATGAAAAGCATCACGTTCTTAAAATTAAAGATTCTGCTCTTATTGCTGCTGCAAAATTGTCACATCGCTACATCACCGGGCGACAACTCCCGGACAAAGCAATCGATTTAGTCGACGAAGCAAGTGCATGCATGAGAGTTCAACTCGATACCCAACCTGAAGAAATTTACGAACTTCAAAATGAGAAGTCCAAGCTTGAAGTTGAAGTGAATGCACATGAGAAAGAGGAAGACAAAGCAAGCCAAGCTCGACTTCCACAAGCAAAAAAGGAGCTGAATGACTTGAACAACCAGCTGCAGCCATTGTTATCAAAACACCAAAAACAGAAATCCGAAATGGAAAAACTCACTAAATTGAAGCAAAAGAAACAAGAAATATTAGTCCTGATAGAAGCCGCCCAAAAACGCCAAGATTTAATCAGAGCCGCGGAACTCCGACGGTTGAAATTAGAGGAAATAGAATTACAAATCGTTGATGTGGAAAGAAGGATTAAAAAAAATGGCTTTATAGTGAAGGACACGGTCGGACCAGAGGAAATAGCGGACGAGGTGAGCCGGTGGACTGGGGTGCCAGTTTCGAGGCTAACCGGGGAAGAGAAAGAGTGGGTTATGGGTTTGGCTGGGCGGTTGAAGAAAAGAGTGGTTGGACAAAATGAAGCAGTTGATTCGGTTGCTGAAGCAGTGATGAGGTTCAGAGCTGGGCTCGCTCTACCGAACCAACCTAATGGTTCGTTTTTGTTTTTGGGTCCGTCTGGGGTTGGGAAGACGGAGCTTGCAAAGGGTTTGGCTCATGAGCTTTTTAACGACGAGAATCGTATGGTTCGGATTGACATGTCGGAGTACATGGAGAAATACTCTGTTTCAAGGCTTATTGGTTCTCCACCTGGGTATGTTGGATACCATGAAGGTGGACAACTAACTGAGCCAGTGAAGAGGCGTCCGTACTGTGTAGTTCTATTCGATGAAGTAGAGAAGGCTCATGTGGATGTTTTGAATATTCTGCTTCAAGTTTTGGATGATGGAAGGTTGACGGACGGGCAGGGTTCAACGGTGGACTTCAAAAACACAGTGATTATCATGACTTCTAATCTCGGCGCGGGTCATCTTTTATCTGGAAAGTACTGCCCCATGCAAGTTGCTCGTGAAAGGGTTATCCAAAAGGTGAAAGAACATTTCAAGCCGGAGTTTGTGAACCGGCTAGACGAAATTCTGATTTTCCGGCCACTTTCTAAAGATCAACAAAGGAGAATCACTAAATCAATGATGAAAGACGTTGCTCGCCGTCTTTTCGAAAAAGGCATTGCCATGGCTGTGACTAAATCCGCTCTTGACTTCGTTCTTGATCAAAGCTTCGATCCGGTTTACGGTGCTAGGCCGATTAGGCGTTGGTTGGAGAAGAAAGTTGTGACGAATATTTCGAAGATGCTAATAAAAGAAGAGATCGGTGAGGAGTACACAGTGTATGTCGATGCCAACGATGATGGAAAAGATTTGAAATATAATGTGAAGAAAAATAATGGTCTCATTGATGGAATCAGTGACAAGAGATATGAAATCTTGATTCAAATTCCAACTATGGAGAAAAATAAAGACGATGAAAGTGAAGAAGCCGAAGGAGGAAACGAGGAGGAGGATGTGGAACCCACGAGTGATGATAGTGATTAG 2259 44.8 MAKSALETYGHDLVEKAEKQTLDPIFGRHKEIRRLLTILCRKTKCNPILIGEPGVGKTAIVEALAQKIAAGNVPAKLSGARIVELDMGAIMAGTIWRGQLEERLKDVMTEVKGSEGKVIVFIDEIHMLVRSDYQGTAAEILKPALGRGNFRCIGATTLKEYKRYIEKDGALARRFKQVYVSEPSVEDSINILRALKERYEKHHVLKIKDSALIAAAKLSHRYITGRQLPDKAIDLVDEASACMRVQLDTQPEEIYELQNEKSKLEVEVNAHEKEEDKASQARLPQAKKELNDLNNQLQPLLSKHQKQKSEMEKLTKLKQKKQEILVLIEAAQKRQDLIRAAELRRLKLEEIELQIVDVERRIKKNGFIVKDTVGPEEIADEVSRWTGVPVSRLTGEEKEWVMGLAGRLKKRVVGQNEAVDSVAEAVMRFRAGLALPNQPNGSFLFLGPSGVGKTELAKGLAHELFNDENRMVRIDMSEYMEKYSVSRLIGSPPGYVGYHEGGQLTEPVKRRPYCVVLFDEVEKAHVDVLNILLQVLDDGRLTDGQGSTVDFKNTVIIMTSNLGAGHLLSGKYCPMQVARERVIQKVKEHFKPEFVNRLDEILIFRPLSKDQQRRITKSMMKDVARRLFEKGIAMAVTKSALDFVLDQSFDPVYGARPIRRWLEKKVVTNISKMLIKEEIGEEYTVYVDANDDGKDLKYNVKKNNGLIDGISDKRYEILIQIPTMEKNKDDESEEAEGGNEEEDVEPTSDDSD* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28130558 28133950 - Chy2G047190.1 Chy02g02452 221900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02452 752 ProSitePatterns Chaperonins clpA/B signature 2. 473 491 IPR028299 -
Chy02g02452 752 Gene3D - 607 706 - -
Chy02g02452 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 550 564 IPR001270 GO:0005524
Chy02g02452 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 443 461 IPR001270 GO:0005524
Chy02g02452 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 517 535 IPR001270 GO:0005524
Chy02g02452 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 488 506 IPR001270 GO:0005524
Chy02g02452 752 MobiDBLite consensus disorder prediction 722 752 - -
Chy02g02452 752 Gene3D - 185 386 IPR027417 -
Chy02g02452 752 Gene3D - 391 605 IPR027417 -
Chy02g02452 752 MobiDBLite consensus disorder prediction 734 752 - -
Chy02g02452 752 SMART AAA_5 439 581 IPR003593 -
Chy02g02452 752 SMART AAA_5 43 184 IPR003593 -
Chy02g02452 752 Pfam ATPase family associated with various cellular activities (AAA) 48 158 IPR003959 GO:0005524|GO:0016887
Chy02g02452 752 Pfam AAA domain (Cdc48 subfamily) 439 601 IPR003959 GO:0005524|GO:0016887
Chy02g02452 752 Gene3D - 1 184 IPR027417 -
Chy02g02452 752 Pfam C-terminal, D2-small domain, of ClpB protein 607 686 IPR019489 -
Chy02g02452 752 PANTHER ATP-DEPENDENT CLP PROTEASE 3 702 - -
Chy02g02452 752 SMART ClpB_D2_small_2 607 698 IPR019489 -
Chy02g02452 752 Pfam AAA lid domain 184 285 IPR041546 -
Chy02g02452 752 CDD AAA 26 178 - -
Chy02g02452 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 387 IPR027417 -
Chy02g02452 752 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 702 - -
Chy02g02452 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 696 IPR027417 -
Chy02g02452 752 CDD AAA 434 561 - -
Chy02g02452 752 Coils Coil 254 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02452 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101217495 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02452 Chy-Chr2:28130558 Chy12g01508 Chy-Chr12:18888894 0 dispersed
Chy02g02451 Chy-Chr2:28128836 Chy02g02452 Chy-Chr2:28130558 6.19E-49 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63