Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02453 ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGTGAAGCCGTTTGTTGCTCCGGCAGTGAATCCGCAAGATCTCCCAGTCGATTATTCCGGTTTCATCGCCGTCGTTTTCGGCATCGCCGGTGTCATGTTCAGGGTATTTTTCTGTTTCTTTTCGAGTACTCATACGCTAATTATGGAGATCTTACTTTCCACTCATGCCACACTATTGGTTTTGGTTGAAATTGGACAGTACAAGCTTAGTTCGTGGCTGGCAATCATATTTTGTGCCCAATCGCTTGCGAATATGAGGAATATTGAAAACGATCTCAAGCAGATTTCCATGGCCATGATGGAGATGGGGGGCGAAAATGACTTGAAAACATGGGTTTCGGATCAGTTAATGTCATTGCTTGGTTTTTCTCAGCCAACGATCGTGCAGTATATGATTGGACTATCCAAACAAGCAACATCACCTGCCGATGTTGTCAACAAGTTGGTGATAGATTTTTCCTTGCCATCTTCTGGTGAAACACTGGCTTTTGCTGAAGGAATTTTCTCCAGAGTGCCACGCAAGCAATCATCTGGTTTAAATCTTTATCAGAAGCAAGAGAGAGAAGCAGCAATGTTGGCAAGAAAGCAAACAACATATGCACTACTTGATGCTGATGACGAAGATGATGTTGAAGATAAAGGACGCAGCAGTGATCTCAAAGAAACAGAAAACCGAAAGAAACATTTTAGAAGGAAAAATGAATATCAAGAAGATGAAGATGATGAAAAGGAAAGTGCTCTTGAAAGAGAAAATAGACAGGTTAAACGACGGCAACAGGCATCCAGTTCTGAAGATGATAGCTCTGAGTCGGAGGAGGAGCGATTGCGAGATCAAAGAGAGAGGGAGCAATTAGAGCGAAAAATAAGGGAAAGGGATGCTGCAGGAACCAAGAAGTTAACGGAGCAAAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGGAGATCAGAAGCTTTGGAGAATGATGGAATTGATACTTTGAGGAAAGTTTCAAGACAGGAGTATTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGATGAGCAATATCTTTTTGAAGGTGTGAAGCTTACTGATGCAGAATATCGGGAGCTAAGGTATAAGAAGGAAATATATGAGCTTGTGAAGAAGCGGACAGACGAGGCTGATGACGTCAATGAGTACAGGATGCCTGAAGCTTATGATCAGGAAGGGGGTGTTAATCAGGATAAGAGGTTTGCAGTGGCAATGCAGCGGTATAGGGATTCAGGTGCTGCTGATAAAATGAACCCGTTTGCAGAACAAGAGGCATGGGAGGAACACCAAATAGGGAAAGCAACGATGAAATTCGGCTCGAAAAACAAAAAGCAATCATCAGATGACTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCATCAGTTATGGAAGGTGATGAGTTTGTTGATGAGCGTCAGACTGAATCACTTGAGAAGTCCAAGGCTCAGTCAGCTTTGGAGAAGCTGCAGGAGGAGAGGAAAACATTGCCAATCTATCCATATCGTGATCAGTTACTTCAAGCTGTCAACGAATATCAGGTTCTTGTAATTGTTGGTGAAACTGGCTCTGGGAAGACCACCCAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACACAACCACGTCGAGTTGCTGCTATGAGCATTGCTGCTCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGGCATGAGGTTGGTTATTCAATACGTTTTGAGGACTGTACGTCAGATAAGACTGTTTTAAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGTGAACCTGACCTTGCAAGCTACAGTGTCGTAATGGTGGATGAGGCTCATGAAAGAACATTATCAACTGATGTTCTATTTGGATTAGTGAAGGACATTGCTAGGTTTCGACCTGATTTGAAGTTGCTAATTTCAAGTGCAACACTTGATGCTGAGAAGTTCAGTGATTACTTTGATTCGGCTCCAATATTTAAAATTCCTGGTAGACGTTATCCGGTAGAAATTAACTTCACAAAAGCTCCAGAAGCAGACTATTTAGATGCAGCAATCGTGACTGCACTTCAGATCCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCGGCTGAGGAAATAATGAAACATAGAACTCGGGGACTGGGCACCAAAATTGCAGAACTCATTATATGCCCCATATATGCTAACTTACCAACAGAACTACAGGCTAAGATATTTGAACCCACACCCGATGGAGCAAGGAAAGTTGTTCTAGCAACTAATATAGCAGAGACATCCTTGACGATTGATGGGATAAAATATGTCATTGATCCTGGTTTTTCTAAAATAAAGTCCTATAACCCAAGGACTGGGATGGAGGCGTTGCAAGTGAGTCCTATCTCTAAAGCATCGGCAAATCAGAGAGCAGGTCGTTCTGGACGAACAGGCCCTGGGATGTGCTTTCGTTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATACAAAGAACAAACCTTGCTAATGTGGTGCTTACACTTAAGAGCCTTGGTATTCATGATTTGGTAAATTTTGATTTTATGGACCAGCCTCCATCTGAAGCGTTGCTAAAAGCTTTGGAACTGCTTTATGCTCTTGGTGCTCTAAATAAACTTGGTGAACTAACTAAGTTGGGTAGGCGGATGGCAGAGTTTCCTCTTGACCCCATGCTTTCTAAGATGATGGTTGCGTCTGAAAAATTCAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTTTCTATTGGAAATTCTATTTTTTACCGTCCTAAGGATAAACAAGTTCACGCAGACAATGCTCGGATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCACTATTGAAGGTCTACAACTCATGGAGGGAAACTAATTACTCTACGCAATGGTGCTATGAGAACTACATCCAGGTTAGAAGTATGAAACGTGCCAGAGATATCAGAGATCAACTTGAAGGGCTTATGGAAAGAGTTGAAATCGAATTAACTTCAAATTTGAATGACTTAGATGCGATAAAGAAGACTATAATATCTGGATTTTTCCCTCACTCTGCTAAGTTGCAAAAGAATGGCTCTTACCGGACCGTTAAACATCCGCAGACGGTTCATATACATCCCAGCTCAGGGTTGGCTCAGGTTCTTCCAAGATGGGTTGTATACCATGAATTGGTATGTACCTCAAAAGAGTATATGAGACAGGTAACGGAGTTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTCAAGGATGTTGAAGATTACAAAGTAGATATGCGATTTTCCGACACGACATCAACTAGAGCTGCATGTTTCAAACAAAATCTCTTTGAATCACCTCCACCTCAAGATGCTTTACTCACTAACCTACTGTTTTTTTCTCCAACAATAAACTTCCTTACACCAAGGGGGCATAAACTTCATATTTTATGCATGTCAATTGGTAATGCAGATGGCATGGGAACCATGCGAAGAGAAGAGTTATACAAAGCTTCCACCGTTCTTAAGGTTCCCCCCAATCAACTGAAGATCCTGGACCATCCAGGTTTGCAGGATGGTTTTGGCCAAGTGTGGGATCATAAATTGCTGGCAGAGATTATTGAACAGGAAATATCAAGCCATGAGATTGACTTGATTATTACTTTTGATAGCTATGGAGTTTCTGGTCACTGTAATCATCGTGATGTGCACAATGGGGTGCGAGATTTCTTACACAATAAGGCTCCACAAAGTTTCGAGGCATGGGAACTAGTCAGTACCAATATACTGCGGAAGTATAGTGGACCAATTGATATCTGGTTATCTATTTTGTTTTCTGAAGCGCACAAAAGTGGAATAACACATTGCTTGGTAAATGAATGTCCACGACAAAGCTTCTTTGCAATGGCTCAGCATGCAAGCCAATGGGTTTGGCAATTTGGATTTGGTCGGCTGGAGAATACCTTTACACGTTGCTTTAATTGCTCTACTCTTGGATTTGTCAGTATCCACCGATATCTACTTCGTGGGAACTGTGCACTGGGATTTCTTCATTTCATGTGA 4224 41.86 MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRVFFCFFSSTHTLIMEILLSTHATLLVLVEIGQYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMMEMGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETLAFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQTTYALLDADDEDDVEDKGRSSDLKETENRKKHFRRKNEYQEDEDDEKESALERENRQVKRRQQASSSEDDSSESEEERLRDQREREQLERKIRERDAAGTKKLTEQKLSRKEEEEAIRRSEALENDGIDTLRKVSRQEYLKKREEKKLEEIRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYELVKKRTDEADDVNEYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKATMKFGSKNKKQSSDDYQFVFEDQIEFIKASVMEGDEFVDERQTESLEKSKAQSALEKLQEERKTLPIYPYRDQLLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPDGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMEALQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLMERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDYKVDMRFSDTTSTRAACFKQNLFESPPPQDALLTNLLFFSPTINFLTPRGHKLHILCMSIGNADGMGTMRREELYKASTVLKVPPNQLKILDHPGLQDGFGQVWDHKLLAEIIEQEISSHEIDLIITFDSYGVSGHCNHRDVHNGVRDFLHNKAPQSFEAWELVSTNILRKYSGPIDIWLSILFSEAHKSGITHCLVNECPRQSFFAMAQHASQWVWQFGFGRLENTFTRCFNCSTLGFVSIHRYLLRGNCALGFLHFM* 1408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28134741 28157504 + Chy2G047200.1 Chy02g02453 221901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02453 1407 PANTHER OS05G0389800 PROTEIN 223 1151 - -
Chy02g02453 1407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 894 IPR001650 -
Chy02g02453 1407 Pfam Helicase associated domain (HA2) 915 989 IPR007502 GO:0004386
Chy02g02453 1407 MobiDBLite consensus disorder prediction 258 277 - -
Chy02g02453 1407 SUPERFAMILY LmbE-like 1185 1372 IPR024078 -
Chy02g02453 1407 MobiDBLite consensus disorder prediction 220 340 - -
Chy02g02453 1407 MobiDBLite consensus disorder prediction 226 251 - -
Chy02g02453 1407 Gene3D - 699 874 IPR027417 -
Chy02g02453 1407 Pfam PAT complex subunit Asterix 5 54 IPR005351 GO:0030176|GO:0044183|GO:0045048
Chy02g02453 1407 Pfam PAT complex subunit Asterix 79 113 IPR005351 GO:0030176|GO:0044183|GO:0045048
Chy02g02453 1407 Coils Coil 1032 1052 - -
Chy02g02453 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 1048 IPR027417 -
Chy02g02453 1407 Pfam Helicase conserved C-terminal domain 725 853 IPR001650 -
Chy02g02453 1407 Pfam GlcNAc-PI de-N-acetylase 1184 1297 IPR003737 -
Chy02g02453 1407 PANTHER ATP-DEPENDENT RNA HELICASE 223 1151 - -
Chy02g02453 1407 SMART ultradead3 521 705 IPR014001 -
Chy02g02453 1407 Gene3D - 1183 1381 IPR024078 -
Chy02g02453 1407 MobiDBLite consensus disorder prediction 285 340 - -
Chy02g02453 1407 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1063 1139 IPR011709 -
Chy02g02453 1407 SMART ha2_5 914 1006 IPR007502 GO:0004386
Chy02g02453 1407 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 638 647 IPR002464 -
Chy02g02453 1407 CDD SF2_C_RHA 700 861 - -
Chy02g02453 1407 Gene3D - 899 1056 - -
Chy02g02453 1407 Coils Coil 280 300 - -
Chy02g02453 1407 Coils Coil 232 252 - -
Chy02g02453 1407 SMART helicmild6 748 853 IPR001650 -
Chy02g02453 1407 Coils Coil 343 370 - -
Chy02g02453 1407 CDD DEXHc_DHX16 523 695 - -
Chy02g02453 1407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 696 IPR014001 -
Chy02g02453 1407 Coils Coil 499 519 - -
Chy02g02453 1407 Gene3D - 478 698 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02453 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1939.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02453 Chy-Chr2:28134741 Chy05g01166 Chy-Chr5:16138440 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g637 . . . . . . . . . . Cma10g00228 . Car10g00213 Car11g00179 Sed08g0258 . Cpe04g01468 Bhi02g00695 Tan09g2054 Cmetu02g0232 . . . . Cla06g01548 Cam06g1709 Cec06g1769 Cco06g1770 Clacu06g1676 Cmu06g1622 Cre06g2435 Cone2ag0818 . . . . . . . . . . . . . . . . Cmo10g00240 Cmo11g00203 . . . . . Cpe18g00765 . . . . . . . . . . . . . . Lsi06g01423 Csa01g00281 Chy02g02453 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39