Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02467 ATGTTGAAATTTGTACATACCCAAGCAATGGATCTTCCGTTTCAGGCAACTAACGATAGCAAAATTCCTGATTACAATGACGTGCGAAGAGGGCATTTCCTCATGAAACTCATAGACGACTCTGTTTCGCGTAATGGGCTCGAATCTATTGCTCGTATTTTCTCCAAGTATCGTGGTTCTATCAATTCTCAGCAGTGCAACTCGATGATCAGGGCTTATTTGGACTTGAATAAGCATTTAAATTCACTGTACATTTTTGCCCTCATGCATAAATTTAGTATTCTGCCCGATTCATCCACTTTTCCTGCTGTTCTTAAAGCAACTGCGCAGCTATGTGATACTGGAGTTGGAAAAATGATACATGGTATTGTTATTCAGATGGGTTTTATTTGTGATGTCTACACAAGTACCGCTTTAGTTCATCTGTATTGTACTTGTTTGTCTATATCTGATGCTTCTCAGTTGTTCGACGAAATGCCCGAGAGAAATGCAGTTACTTGGAATGCTTTGATTACTGGTTATACTCATAATAGAAAGTTTGTGGAAGCTATCGATGCTTTTCGAGGAATGTTGGCAGCTGGGGCTCAACCGAGTGAGAGAACCGTGGTTTTAGTTCTATCGGCTTGTTCTCATTTGGGAGCTTTTAATCAAGGAAAGTGGATCCATGAGTTTATTTATCATAATAGGTTGAGACTGAACGTGTTTGTGGGCACAGCTCTTATTGATATGTATGCTAAATGTGGGGCTGTTGATGAGGTCGAGAAGGTCTTCGAAGAAATTAGAGAGAAGAATGTGTATACATGGAATGTCTTGATTTCTGGATATGCCATGAATGGGCAAGGCGATGCAGCTTTGCAGGCTTTTTCTAGGATGTTGATGGAAAATTTCAAGCCAGATGAGGTTACCTTTCTAGGTGTTTTGTGTGCATGCTGTCACCAAGGTCTGGTAACGGAAGGGCGCTGGCAATTCATGAGCATGAAACAACAGTTTGGACTGCAACCAAGGATAGAGCATTATGGATGTATGGTAGACCTACTTGGTCGAGCGGGATTGTTGGAGGAAGCTCTAGAGTTGATCCAATCCATGAGCATAGAGCCAGACCCTATCATTTGGAGGGCTTTGCTTTGTGCTTGCAGAGTCCATGGGAATACGAAATTGGGTGAATATATTATCAAAAGACTTATAGAACTAGAACCAAACAATGGGGAAAATTATGTCTTGCTGTCAAATATATACTCAAGGGAACGACGGTGGGCTGAAGTAGGGAAGTTGAGGGGAATGATGAGTCTAAGAGGGATCAGAAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAACGTAGTTTATGAGTTTGTTGCATCAAATGACAGAAAACCAGAATTTGAGGCAATATACAAGCAGTTGGACAATTTGATTAAGAAATTGAAAGAAAATGGTTATGTTACAGGCACTGACATGGCTTTATATGATATTGAGAAAGAAGAGAAAGAGCATTCTGTGATGTACCATAGTGAGAAACTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTAAGAATTTGCTTGGACTGCCACGAGTTTTTCAAGGTTTTATCACTCGTCTATAAAAGATATATTGTTGTGAGAGACAGAAACCGTTTCCACCATTTTTATGAAGGTTTCTGTTCGTGCCGAGACTATTGGTGA 1716 40.15 MLKFVHTQAMDLPFQATNDSKIPDYNDVRRGHFLMKLIDDSVSRNGLESIARIFSKYRGSINSQQCNSMIRAYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVEAIDAFRGMLAAGAQPSERTVVLVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVDEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28253901 28255616 - Chy2G047340.1 Chy02g02467 221915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02467 571 PANTHER - 45 545 - -
Chy02g02467 571 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 45 545 - -
Chy02g02467 571 Coils Coil 458 478 - -
Chy02g02467 571 Pfam E motif 381 443 IPR046848 -
Chy02g02467 571 Gene3D Tetratricopeptide repeat domain 36 222 IPR011990 GO:0005515
Chy02g02467 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Chy02g02467 571 Pfam PPR repeat family 163 210 IPR002885 -
Chy02g02467 571 Pfam PPR repeat family 263 312 IPR002885 -
Chy02g02467 571 Gene3D Tetratricopeptide repeat domain 223 290 IPR011990 GO:0005515
Chy02g02467 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Chy02g02467 571 Gene3D Tetratricopeptide repeat domain 291 509 IPR011990 GO:0005515
Chy02g02467 571 TIGRFAM PPR: pentatricopeptide repeat domain 339 363 IPR002885 -
Chy02g02467 571 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Chy02g02467 571 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Chy02g02467 571 Pfam PPR repeat 338 362 IPR002885 -
Chy02g02467 571 SUPERFAMILY TPR-like 248 420 IPR011990 GO:0005515
Chy02g02467 571 Pfam DYW family of nucleic acid deaminases 479 571 IPR032867 GO:0008270
Chy02g02467 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02467 - - - csv:101215826 1139.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02467 Chy-Chr2:28253901 Chy03g01128 Chy-Chr3:14548045 4.12E-163 dispersed
Chy02g02467 Chy-Chr2:28253901 Chy02g02617 Chy-Chr2:29331420 3.39E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19