Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02469 ATGAAGGAGAAAGACACTGATAATCAATCATGGCATCTTCCAATTCTCATTTTCTTCATCTTAATCACAGGTAGAATTGTCGAGGGACAAGAATTGTTGAGAGATAATACAGAAGTTTTGTTACAGTTGAAATCATTTTTAGAAGAACACAATCCCATTAAACGAGGAAAATATTCGTCTTGGAATTTGGAGAGTTCACCCTGTTCTTGGGCTGGAATATCCTGTAATCAGAACAAGTCCCAAGTCATCGGAATTGACCTTTCAAACGAAGATATTTCCGGCAAAATTTTTCATAATTTCTCTGCTTTGTTGGAGTTGACGGACCTTGACCTCTCTAGAAACACTCTCTCCGGCGAAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGAAACTGAATTTGTCACACAACATCATCGACGACAAGTTGAACTTATCGGGTTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAATCGAATTTGGGGAGAAATAAGGTTGAATTTTCCAGGCATTTGCCGGAATTTGATGTTCTTGAATGTTTCTGGTAATAATCTCACTGGTAGGACGGATGACTGTTTTGATGAGTGCTGGAATTTGCAACATGTGGATTTAAGCTCCAACGAATTCAGTGGAGGATTGTGGAGTGGGTTGGCGAGGACTCGGTTTTTTTCGGCGTCGGAGAATAAACTTTCCGGTGAAGTTTCGCCGGCGATATTTACAGGGGTTTGTAATTTGGAGGTGTTGGACTTGTCAGAGAATGCGCTTTTCGGCGGAGCTCCGGCGGAGGTTTCCAATTGTGGGAATTTATCTTCTTTGAATCTGTGGGGGAACCAATTTTCCGGGAAGATTCCGGCGGAAATGGGAAGAATTTCGGGTTTGCAGAATTTGTATCTAGGAAAGAACAATTTTTCTCGGGAAATTCCAGAATCCCTTTTGAATTTGAGCAATTTGGTGTTTCTTGATTTGAGCAAGAACCATTTTGGAGGGGACATTCAAGAGATTTTCGGAAGGTTTACACAGGTGAGATTTCTTGTTCTTCATGGGAATTTTTACACTGGAGGGATTCATTCTTCTGGGATTCTTAAGTTGCCAAGAGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTCCATTGCCTGTGGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATCAGTTCAATGGAAACATTCCATCAGAATATGGGAACTTGAAGAATCTTCAAGCTCTTGACCTTTCATTCAACAGATTAAATGGGTCGATCCCAAGCAGCTTTGGGAACTTGACTTCACTCTTGTGGCTAATGCTGGCAAATAACTCTTTGACAGGTGAAATCCCCAGGGAGCTAGGCAATTGTTCTAGCTTGTTGTGGTTGAACCTTGCCAACAATAAGCTACATGGGCGCATCCCGTCTGAGCTAGCGAACATTGGAAAAAATGCCACGGCGACATTCGAAATGAATCGACGAACTGAAAAGTTCATCGCTGGATCAGGGGAATGCTTGGCAATGAAGAGATGGATTCCAGTAGACTACCCTCCTTTCAGCTTTGTCTACACAATCCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAAAGTAAGGACATTGCAAATCTCTGGTTATGTTCAACTGACTGGGAATCAGTTCAATGGTGAGATACCAAACGAGATTGGAATGATGAAAAACTTCAGTATGTTGCATTTGAGTTTCAACAATTTCATTGGGAAACTCCCTCCACAGTTGGGATCTCTGCCATTGGTTGTTCTAAACATATCGGCCAACAATTTTTCAGGCGAGATCCCGACGGAGATTGGAGACCTTAAGTGCTTACAGAATCTTGATTTATCATACAACAATTTCTCTGGCATGTTCCCTCGAAGTTTTGTCAACTTGAATGAGCTTAACAAGTTCAACATCTCATACAATCCTCTCATAACTGGGGAAGTAATTCCAAGTGGGCAATTCTCAACGTTCGACAAGGACGCGTATCTCGGCAATCCTCTTTTGCGCCTTCCTTCTTTCTTCAACACAACCCCACCTAAGTCACCAGGCAACCCAAGAACGGCAGGATCATCAAAAAGGAATTCAAGGCTAGTTGGAATGTTGGCTTCTTTATCATTGATCCTTGCTTTTTTGGTATTTGCCATGGAACTTGCTACAGCGAGACGAGCACTTGACGGAGGTGAAGAGTGTCTAGTTGAATGGGCCAAAAGGGTGATGGGAAATGGAAGACATGGGTTGAGTAGAGCAGTAATACCGGTTGCAGTTTTGGGGTCAGGCCTTGTCGAGGGGGCTGACGAGATGTGCGAGCTGCTCAAGATTGGGGTAAGGTGCACAAACGAAGCACCATCAGCAAGACCGAATATGAAGGAAGTTCTAGCTATGTTGATCAACATCATAGGCTTAAGAGGGGGGGATGAATTCAAACACATCTTCTCCCCTCCATCCTTGTGA 2520 42.9 MKEKDTDNQSWHLPILIFFILITGRIVEGQELLRDNTEVLLQLKSFLEEHNPIKRGKYSSWNLESSPCSWAGISCNQNKSQVIGIDLSNEDISGKIFHNFSALLELTDLDLSRNTLSGEIPGDLNNCRNLRKLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGEIRLNFPGICRNLMFLNVSGNNLTGRTDDCFDECWNLQHVDLSSNEFSGGLWSGLARTRFFSASENKLSGEVSPAIFTGVCNLEVLDLSENALFGGAPAEVSNCGNLSSLNLWGNQFSGKIPAEMGRISGLQNLYLGKNNFSREIPESLLNLSNLVFLDLSKNHFGGDIQEIFGRFTQVRFLVLHGNFYTGGIHSSGILKLPRVARLDLSFNNFSGPLPVEISEMKSLEFLILAYNQFNGNIPSEYGNLKNLQALDLSFNRLNGSIPSSFGNLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGRIPSELANIGKNATATFEMNRRTEKFIAGSGECLAMKRWIPVDYPPFSFVYTILTRKSCRSIWDRLLKGYGLFPFCSKVRTLQISGYVQLTGNQFNGEIPNEIGMMKNFSMLHLSFNNFIGKLPPQLGSLPLVVLNISANNFSGEIPTEIGDLKCLQNLDLSYNNFSGMFPRSFVNLNELNKFNISYNPLITGEVIPSGQFSTFDKDAYLGNPLLRLPSFFNTTPPKSPGNPRTAGSSKRNSRLVGMLASLSLILAFLVFAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVEGADEMCELLKIGVRCTNEAPSARPNMKEVLAMLINIIGLRGGDEFKHIFSPPSL* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28273477 28276953 - Chy2G047360.1 Chy02g02469 221917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02469 839 PRINTS Leucine-rich repeat signature 413 426 - -
Chy02g02469 839 PRINTS Leucine-rich repeat signature 106 119 - -
Chy02g02469 839 ProSiteProfiles Leucine-rich repeat profile. 129 150 IPR001611 GO:0005515
Chy02g02469 839 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Chy02g02469 839 Gene3D Ribonuclease Inhibitor 548 704 IPR032675 -
Chy02g02469 839 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Chy02g02469 839 Gene3D Ribonuclease Inhibitor 360 510 IPR032675 -
Chy02g02469 839 SUPERFAMILY L domain-like 547 668 - -
Chy02g02469 839 SMART LRR_typ_2 292 316 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 103 127 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 244 268 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 413 436 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 365 389 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 437 461 IPR003591 -
Chy02g02469 839 SMART LRR_typ_2 629 652 IPR003591 -
Chy02g02469 839 Pfam Leucine Rich repeat 126 143 IPR001611 GO:0005515
Chy02g02469 839 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 735 - -
Chy02g02469 839 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 732 827 - -
Chy02g02469 839 SUPERFAMILY RNI-like 79 283 - -
Chy02g02469 839 SUPERFAMILY L domain-like 219 481 - -
Chy02g02469 839 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Chy02g02469 839 Pfam Leucine rich repeat 608 666 IPR001611 GO:0005515
Chy02g02469 839 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 735 - -
Chy02g02469 839 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 732 827 - -
Chy02g02469 839 Gene3D Transferase(Phosphotransferase) domain 1 730 825 - -
Chy02g02469 839 Gene3D Ribonuclease Inhibitor 194 359 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02469 - - - csv:105436350 1447.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02469 Chy-Chr2:28273477 Chy06g00401 Chy-Chr6:2718052 5.40E-81 dispersed
Chy02g02469 Chy-Chr2:28273477 Chy02g00590 Chy-Chr2:3585818 5.16E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35