Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02475 ATGGCGCTGTTCAGACGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGCTACAGAGTCACTTTCCTGATGCGTCATTCATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGGAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTATTGCCGTTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAAGGTCAACAGAATGTGCTCTTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCCGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCCGATTGGCCTCCATCAGATACACCTCTAATTTTGGATTGTTTAATACTAAGAGTTCTACCACTTTTTGATGGGGGAAAGGGATGTAGGCCTGTTGTGCGTATTTACGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCGACACCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGACGAAGATCTAGTACACGAGGAGATGATGTTTCGAATCATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCAGTATCCCAAGGACTTCAGAGTTGAGGCGCTCTTTTTGGATGCTGATGCTGTTGTCTCCAATCTCACCGCATCCTTTGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGTAATGGATGGGCAGGAAGCAAAGGGATCCAATGATCCTCACGTAGTCAATCATGTAAATCGTAAAGAAGAATGGAAGGAGGACTTCGATCCTCCTGCATTCCAAGACTGTGCATCTGACGATGGAAATCTTAAGCATGATAAAAAGTCTGATTTTGATGCAGTGAAGGACATCACAGTGGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGAACTTAATGCAGTTAAGGACATTGCCGTGGATGATGGAGAAATGAATTCGAATTCCTTCTTGGTAGCTACTAATGTCCCGACTCATGTGAAAGTCCAGGGGTTGGTGGATGATGCATATGAGAAATTTGAAGATATGGAAGAAAAGGATGATGGAAGAGATACTTCACCCGAGAAATTGGAAAACAAGGTTCTGCAGAAGAAGTTGAGTGCTGATGGTTCTAGACAAAAATCAGAAAAATTGCAAACACCAATTCCCAAGAAACAGCCTGTTTCAAGTGGAAAACCGACCAATGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCAAAGCCAAATGCAGTTTCTAGATGGATCCCTCCTAACAAAGGCTCTTATATGAATTCTATGCATGTTTCCTATCCACCCTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCGTCGAAGGATGTAAGTGCAAATTCCAAAACGAAGGCCACTGCCACCCTTGATTCTCTGGTTTCTTCAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATACTGTGAGGCCTTCTCACTCCGCACCTGGGAACCTCATGCATGGTCCATCATCTCCGGTTGAGTCAATTGTGACTGGTTCTATACCTTCCTCTGTGGGCATGCTATCTACCTTAAGGAATATTGCCAGTACTTCTCTTCTTGCCTCGTCACATAAAGAGATATCACTATCACCACCACCTCCCCCACCTCCCCCACCTTCTATGAAACATGAAGCACTTATTCCACCACCCCCACCACCCCCACCGCTCCCACCTATTATTTCAGGGCATG 2200 43.41 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPSDTPLILDCLILRVLPLFDGGKGCRPVVRIYGQDPSAPANRTSKLLFSTPIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRIMFHTAFVRSNIMMLNRDEVDVLWDARDQYPKDFRVEALFLDADAVVSNLTASFDDEDGNETGAASPEEFFEVEEIFSNVMDGQEAKGSNDPHVVNHVNRKEEWKEDFDPPAFQDCASDDGNLKHDKKSDFDAVKDITVDDVKYKLDENIYSELNAVKDIAVDDGEMNSNSFLVATNVPTHVKVQGLVDDAYEKFEDMEEKDDGRDTSPEKLENKVLQKKLSADGSRQKSEKLQTPIPKKQPVSSGKPTNDMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVSANSKTKATATLDSLVSSDVFTERKNYKVDTVRPSHSAPGNLMHGPSSPVESIVTGSIPSSVGMLSTLRNIASTSLLASSHKEISLSPPPPPPPPPSMKHEALIPPPPPPPPLPPIISGHX 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28320742 28324393 + Chy2G047420.1 Chy02g02475 221923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02475 734 MobiDBLite consensus disorder prediction 644 663 - -
Chy02g02475 734 MobiDBLite consensus disorder prediction 490 523 - -
Chy02g02475 734 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Chy02g02475 734 Gene3D Protein tyrosine phosphatase superfamily 14 205 IPR029021 -
Chy02g02475 734 SMART PTEN_C2_2 198 338 IPR014020 -
Chy02g02475 734 MobiDBLite consensus disorder prediction 490 563 - -
Chy02g02475 734 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Chy02g02475 734 Gene3D - 206 336 - -
Chy02g02475 734 MobiDBLite consensus disorder prediction 698 734 - -
Chy02g02475 734 CDD PTP_PTEN-like 16 190 - -
Chy02g02475 734 PANTHER FORMIN-J 1 727 - -
Chy02g02475 734 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Chy02g02475 734 MobiDBLite consensus disorder prediction 689 734 - -
Chy02g02475 734 MobiDBLite consensus disorder prediction 524 563 - -
Chy02g02475 734 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02475 - - - csv:101215105 1322.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02475 Chy12g01523 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02475 Chy-Chr2:28320742 Chy07g00331 Chy-Chr7:2686037 0 dispersed
Chy12g01523 Chy-Chr12:18995713 Chy02g02475 Chy-Chr2:28320742 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82