Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02491 ATGGCGTTTCTTGGACTTCTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGCTCTTGCCAACAACAATGGAGGTGGTTGGATTAGTGCCCACGCCACATTCTACGGTGGGGGTGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGTACAGCTTTATTCAACAATGGACTGAGTTGTGGCGCTTGCTTTGAAATCAAATGTGTAAATGACCCAAAATGGTGTCTTCAAAAGTCCATAGTGGTTACTGCCACAAACTTTTGTCCACCAAACAATGCGCTCCCAAACAACGCCGGCGGCTGGTGTAACCCTCCCCAACACCATTTCGATCTCTCCCAACCCGTCTTCGAACAAATCGCTGGTTACAAAGCCGGCATTGTCCCAGTTGCATACAGAAGGGTATCTTGTGAGAAGAAAGGAGGCATTAGATTCACAATCAATGGTCATTCGTACTTCAATTTAGTCCTTGTAACCAACGTTGGTGGAGGTGGGGATGTTCATGGTGTGTGGATTAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAATTGGGGACAGAATTGGCAGAGCAATTCATATCTGAATGGACAAAGCTTATCGTTCAAAGTGACCACCGGCGATGGCCGAACAGTGATATCCAATGACGTAGCGCCAGCTCAGTGGAGCTTTGGTCAAACTTTTAGAGAAATGGCCACCGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCAACGTGTGCTCTCAGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGGTGTACTTAAACGGCAGTCTTCCCGGCGACAATGGATTTGACCCATTGGGATTAGCGGAAGACCCAGAGAACTTGAGGTGGTATGTTCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTTGGTGTCGCCGGAATGCTTCTACCGGAGGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCTGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTTGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCCCCAACTCTTGAAGCTAAAGAGAAGGAAATAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGGAAAGGGCCATTTGACAATCTTTTGCAGCACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 1503 48.77 MAFLGLLLVGLLLSLGCDSALANNNGGGWISAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLQKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFEQIAGYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVISNDVAPAQWSFGQTFREMATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGLPSPVYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28417130 28421364 + Chy2G047580.1 Chy02g02491 221939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02491 500 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Chy02g02491 500 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 249 500 - -
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Chy02g02491 500 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Chy02g02491 500 Pfam Lytic transglycolase 64 149 IPR009009 -
Chy02g02491 500 Gene3D - 15 155 IPR036908 -
Chy02g02491 500 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Chy02g02491 500 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 249 500 IPR001344 GO:0009765|GO:0016020
Chy02g02491 500 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Chy02g02491 500 Gene3D - 157 251 IPR036749 -
Chy02g02491 500 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Chy02g02491 500 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Chy02g02491 500 SMART dpbb_1 64 149 IPR007112 -
Chy02g02491 500 Gene3D Chlorophyll a/b binding protein domain 311 490 - -
Chy02g02491 500 Pfam Chlorophyll A-B binding protein 311 470 IPR022796 -
Chy02g02491 500 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Chy02g02491 500 SUPERFAMILY Chlorophyll a-b binding protein 301 497 - -
Chy02g02491 500 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02491 Chy12g01533 CCT
Chy02g02491 Chy12g01533 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02491 Chy-Chr2:28417130 Chy05g00682 Chy-Chr5:8773611 1.91E-127 dispersed
Chy02g01290 Chy-Chr2:9438167 Chy02g02491 Chy-Chr2:28417130 3.05E-60 transposed
Chy02g01569 Chy-Chr2:13904381 Chy02g02491 Chy-Chr2:28417130 8.12E-39 transposed
Chy03g00521 Chy-Chr3:7204554 Chy02g02491 Chy-Chr2:28417130 3.76E-29 transposed
Chy03g01543 Chy-Chr3:17608116 Chy02g02491 Chy-Chr2:28417130 6.38E-63 transposed
Chy09g00695 Chy-Chr9:9241369 Chy02g02491 Chy-Chr2:28417130 3.87E-44 transposed
Chy10g00781 Chy-Chr10:13858504 Chy02g02491 Chy-Chr2:28417130 1.46E-71 transposed
Chy12g01533 Chy-Chr12:19057148 Chy02g02491 Chy-Chr2:28417130 2.00E-162 transposed
Chy10g01014 Chy-Chr10:15516342 Chy02g02491 Chy-Chr2:28417130 3.93E-132 wgd
Chy12g01532 Chy-Chr12:19055053 Chy02g02491 Chy-Chr2:28417130 4.17E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02491 K08910 - csv:101222701 499.975