Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02498 ATGGACCCTTCATGGAGGCCGAAGTGTCAGATCATGTCGTCCTTTGAAGATTCATATCCTTTTTCATGCAATCTTTCTCCAATCCATTTTAGATCAAGCTACAACAATAATTATTCAGGGCTGGATTGGAACTACGCCAATTTTGGGTTACAAGAAAACATTTTTGAAGAGTCTTTTTTGGACCCTAAAGATATTGTGCCTATTAACACCTATATATCAGAAGATGAGGTTGGAATTTGGAATGAAATGGATAATGGGGTATTTGGGGTTGTTGAGGAAGAGCAGCCATTGTTACTGCTGGAATGTGGAGAAAATGAGGAAAAGGAAGAGATGGTGGTGAGTAATAAGAAGGGGAAAAAAAGATCAAAGTGTTTGAAATCAGAAAATGAATGTAGCAACAATAGCAGTAATAATAACGGGAGCTGTTATTCATCATCAAAAATGTTGTCAAGAAAAGTAATACAAGAGTATTACTATATGCCTATAACTCAAGCTGCTAAAGAGCTTAATGTTGGACTTACTCTTTTGAAGAAGAGGTGTAGAGAATTGGGCATAGGAAGATGGCCTCATAGGAAGTTGATGAGCATACAAACCCTAATCAAGAATATCAAGGAGCTGATTGAAAAGGGAGATGAAGAAGAAGGAAATGGATCAGAGAATTATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATCTGCAATTAGAAGATAACACAAAGAGGCTTAGACAAGCTTGGAAAAAGCATATGTTAATTGTTTGA 792 36.24 MDPSWRPKCQIMSSFEDSYPFSCNLSPIHFRSSYNNNYSGLDWNYANFGLQENIFEESFLDPKDIVPINTYISEDEVGIWNEMDNGVFGVVEEEQPLLLLECGENEEKEEMVVSNKKGKKRSKCLKSENECSNNSSNNNGSCYSSSKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDEEEGNGSENYKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQAWKKHMLIV* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28445422 28447337 - Chy2G047650.1 Chy02g02498 221946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02498 263 PANTHER PROTEIN RKD1-RELATED 12 259 - -
Chy02g02498 263 Pfam RWP-RK domain 149 196 IPR003035 -
Chy02g02498 263 ProSiteProfiles RWP-RK domain profile. 132 216 IPR003035 -
Chy02g02498 263 PANTHER PROTEIN RKD4 12 259 IPR044607 GO:0003700
Chy02g02498 263 Coils Coil 196 216 - -
Chy02g02498 263 Coils Coil 220 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02498 - - - cmo:103494325 408.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02498 Chy-Chr2:28445422 Chy06g01191 Chy-Chr6:10644028 2.45E-27 dispersed
Chy02g02498 Chy-Chr2:28445422 Chy02g00505 Chy-Chr2:3087146 5.42E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17606 PF02042 RWP-RK 3.40E-20 No_clan Chy TF