Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02524 ATGGAAGTGATTTGCTTGTTATTACAGATTATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCCAGATCATTTTTTCTTAGTGGATCGCGATGTAATGCAGACGGGGCTTCGTGCACATGCCCTGAAGATGAAACTTGTGTTTCCCAGAGACAAAACGCTAGAAATGAAACCCTGCCCTCACAAAATCCATCTACCTTGGTTGCCAATAGTTCACCTAGAGTAGGACCTTTAATTGCCGGAGAAGCAGCAAAAGTAATTGTATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCTATTCGACAAGTTACGAACACTGCTCCCAATCACCAGAGGGGAGCAGAATGTGTAAGATACGCCAGTGGCCTTAACACTGTTCTGGATGGTGAGTGCACTTCACCAAGGATAACGGATCAGGTTGTTAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACTTTGTGAATTTTAAAATCCCCTTATCTGACTATGGTGGAACATTTAGCTCATCCAAGAATTGTATGGTTGATCCTGCCCGGTCCATTACTTCTGTCAAACCTTCAAAAATTAAGCATCTGAGAAGAGAGAATATTTCTAGAGTTCATTCTAGACCATCTGTTGAAATCCCTGTAGATTCTAAGCCCCAAAGTAGTAGTAACCATGGTTCAAATTGCAAGCCCGCACAATCCAGTTATGTCAAAGGCTCAAGGCAAGAAGTTTCCGAGGCCAGAACACAAAAGTCGGTGGTATTTCAAAATATTTCCTCAGGCAAGTGTGATAAAAGGAATTTACCACAGAGAACAAGGGTTCATTCAAACAGCTTTACTTCACATTTTCATTCCGTTGCACAGACCACAGGGTCAGACTTCACAAATTCTTCTAAGAATTTTAAAAAGTTTCCAGATAATTTAAAAAGCCCCACAGGAATGGCACCAATCACTTCATCGTTTCTGAATGCCCCTAATGTTGTGGAAAGTGTTTCTTGCTTGTTGCAACAACTTAAATGGGGCCCTGCTGCAGAAGAGGCTATTGGGAAATTGAACTGTTGGATAGATGCTTACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCATGCTGTTGCTCTTGGGTTCTTTTATTGGTTAAAGCGTCTACCTAGGTTTAGACATGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGTGCCAAACAGTTTGCTGCTATAAATAAATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACATATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCTGATAGAGTCACCTACTGCACACTCATTGACATTCATGCAAAATCCGGCTTTCTCGATGTTGCCATGGGAATGTATGAGAAGATGCAAGATGCTGGCCTCACTCCCGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGCAGGATGGTTGATGAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTACCGTGATATGCAACAATCAGGTTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGTGGTTTCCTTGAGGAGGCTGAAGGTATATTTATTGAAATGCAAAAGAAGAACTGGGTGCCTGATGAACCTGTTTATGGTCTATTAGTGGACTTGTGGGGAAAATCTGGTAATGTGCAAAAGGCGTGGGAATGGTATCATGCTATGCTTAAGGCGGGTTTAAAGCCAAATGTTCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTACACCAACTATCCGATGCCTATCAGCTGTTGCAATCTATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTAAGTTGTTGCACTGATGCGCAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTCGTGTCGTTGCCATCGGCTGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGACAGAGAGAGCAAGAGGGGGCTCGTAGATGCAGTTGTAGATTTTCTTCATAAATCAGGACTTAAGGAGGAGGCAGGCTGTGTCTGGGAGGCTGCCATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCCTGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACCGCCGTAACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAACTACTTCTTTCAGGTGTCGGTCCCAGCCGAATTGATATTGTGACCGGATGGGGTCGGCGAAGTAAGGTCACTGGATCTTCCCTAGTGAGACAGGCAGTTCAGGACCTGCTTAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGGGAGCCTCTAAGTAGATGGTTGCACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2655 43.05 MEVICLLLQIMLRAKQIGSLSNSARSFFLSGSRCNADGASCTCPEDETCVSQRQNARNETLPSQNPSTLVANSSPRVGPLIAGEAAKVIVSHKTDNVDLSVSIRQVTNTAPNHQRGAECVRYASGLNTVLDGECTSPRITDQVVKAGIMAVNLFSDFVNFKIPLSDYGGTFSSSKNCMVDPARSITSVKPSKIKHLRRENISRVHSRPSVEIPVDSKPQSSSNHGSNCKPAQSSYVKGSRQEVSEARTQKSVVFQNISSGKCDKRNLPQRTRVHSNSFTSHFHSVAQTTGSDFTNSSKNFKKFPDNLKSPTGMAPITSSFLNAPNVVESVSCLLQQLKWGPAAEEAIGKLNCWIDAYQANQILKRVDDHAVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLLLSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLHQSYVERMHLL* 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28603866 28606520 + Chy2G047910.1 Chy02g02524 221972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Chy02g02524 884 ProSiteProfiles Smr domain profile. 784 865 IPR002625 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Chy02g02524 884 SUPERFAMILY HCP-like 422 631 - -
Chy02g02524 884 Gene3D Tetratricopeptide repeat domain 476 621 IPR011990 GO:0005515
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 601 634 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 636 668 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 565 599 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 460 494 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 530 563 IPR002885 -
Chy02g02524 884 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Chy02g02524 884 SUPERFAMILY SMR domain-like 782 862 IPR036063 -
Chy02g02524 884 SMART SMR_2 781 867 IPR002625 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Chy02g02524 884 Pfam PPR repeat family 632 679 IPR002885 -
Chy02g02524 884 Pfam PPR repeat family 422 468 IPR002885 -
Chy02g02524 884 Pfam PPR repeat family 527 573 IPR002885 -
Chy02g02524 884 Gene3D Tetratricopeptide repeat domain 349 475 IPR011990 GO:0005515
Chy02g02524 884 Gene3D - 761 863 IPR036063 -
Chy02g02524 884 PANTHER BNAA07G31720D PROTEIN 11 884 - -
Chy02g02524 884 Pfam PPR repeat 489 521 IPR002885 -
Chy02g02524 884 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Chy02g02524 884 Pfam PPR repeat 391 420 IPR002885 -
Chy02g02524 884 Pfam PPR repeat 601 630 IPR002885 -
Chy02g02524 884 MobiDBLite consensus disorder prediction 213 242 - -
Chy02g02524 884 PANTHER OS03G0856100 PROTEIN 11 884 - -
Chy02g02524 884 MobiDBLite consensus disorder prediction 201 242 - -
Chy02g02524 884 Gene3D Tetratricopeptide repeat domain 623 695 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02524 - - - csv:101217022 1753.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02524 Chy-Chr2:28603866 Chy01g01766 Chy-Chr1:23322693 4.40E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33