Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02535 ATGGATCCTCCCCTCGTTAACGAATCCTCCTTTTCTGCTGCGAATCCTTCTGCTTACAGCTTGGCTTCGATTTGGCCTTTTGGGGGGGACCAGGGTGGGAGTGTATTGGGGCTTCGAATGGCTAATTTGGCTCAGAATCTTGGTGGGTTTCGTGAGAGCTCCACGAATCGTGATGGGTCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAAGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAATTCAAATGATAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGATCCTAACTCAGCAGATGGTAAGAAGCTGGCCGATCAAAGCCCGAAACCCGAACCACCAAAAGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAACTTGAAGCTGTGAATTCCAGGATGAACATAACCCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAACCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGCAAGAGATTATACCCAAGGTGCACAAACTGAATGGTTGCATATGCAAATCGGTGGAGGTTTTGAAAGAACGTCTTAG 831 43.92 MDPPLVNESSFSAANPSAYSLASIWPFGGDQGGSVLGLRMANLAQNLGGFRESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNDKRMKVVESRDENGGIKAEVDPNSADGKKLADQSPKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNITPGIEGFTVKNIVNQPYDAAGILYGSQAARDYTQGAQTEWLHMQIGGGFERTS* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28660503 28663513 + Chy2G048020.1 Chy02g02535 221983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02535 276 MobiDBLite consensus disorder prediction 49 68 - -
Chy02g02535 276 MobiDBLite consensus disorder prediction 69 84 - -
Chy02g02535 276 MobiDBLite consensus disorder prediction 104 143 - -
Chy02g02535 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Chy02g02535 276 Coils Coil 200 220 - -
Chy02g02535 276 MobiDBLite consensus disorder prediction 85 103 - -
Chy02g02535 276 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Chy02g02535 276 MobiDBLite consensus disorder prediction 49 143 - -
Chy02g02535 276 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 275 - -
Chy02g02535 276 SMART finulus 159 209 IPR011598 GO:0046983
Chy02g02535 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 275 IPR024097 GO:0006355
Chy02g02535 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983
Chy02g02535 276 Gene3D - 150 224 IPR036638 GO:0046983
Chy02g02535 276 CDD bHLH_AtBPE_like 143 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02535 Chy-Chr2:28660503 Chy03g00988 Chy-Chr3:13411240 1.98E-94 dispersed
Chy02g02535 Chy-Chr2:28660503 Chy01g00774 Chy-Chr1:5949888 1.90E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17614 PF00010 HLH 2.20E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02535 - - csv:101215588 539.265