Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02540 ATGGTGTCCGCATCGACTCAGAAGAACATGCACTCTCTTCTTGTAGCCAATCTCACGAAGCTAACGATTCCTTCATCTTCTTCTTCTTCTTCTCCTTCTGCATCCGCCGCCGCCGTTCATGACTTTGATTTCAACGATGTATTTGGCCCTACAAATCCGTCCCCGTCATCTTTTCACGGGGACCCACAACACCATGAACAGCAACAACCAGTGGTTATTCATAACAGATCTCATTCATTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCAGCTTCTCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAGGAAGAAGAAGAAGATGACCTAGAAATCTCGACTCGTGATGGAGCTCAAGAGGAGGAGAAAAGGGTTGGTGAAACTGAAAATTGTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGTAAGGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTGATAATGATGGGATTTATGCTATGAAAGTGATGAGAAAGGATACTATTATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTTCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATCGTATCGGCTGTTTCTCATCTTCACAACTGTGGCATTGTGCACCGTGATCTCAAACCTGAGAACATTCTCATGGATGCTGATGGACATGTAGTGCTTACTGATTTTGGACTGGCCAAGGAGATTGATGAATCAAGTCGGTCGAATTCGTTGTGTGGAACAACTGAATACATGGCTCCAGAAATCTTGCTTTCTAGAGGCCATAACAAAGATGCTGATTGGTGGAGCGTTGGAATCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACACGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCACCATACCTGAGCACTGAAGCCCACTCTTTGCTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCGAAGGGAGGGGACGAGATAAAAGCCCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCGAAATTCAAGCCGGATGTCAGTGGAAATGACTGCACAGCAAATTTCGATCACTGTTGGACAGCAATGCCCCCCGACGACTCACCAGCTCCAACCCCAACAGATGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCTTTGGCTTTCATCATCTGGATAG 1452 44.9 MVSASTQKNMHSLLVANLTKLTIPSSSSSSSPSASAAAVHDFDFNDVFGPTNPSPSSFHGDPQHHEQQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEEEDDLEISTRDGAQEEEKRVGETENCGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSDNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSRGHNKDADWWSVGILLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPKGGDEIKAHKWFRPVNWKKLECRELQPKFKPDVSGNDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNLWLSSSG* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28692266 28694416 + Chy2G048070.1 Chy02g02540 221988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02540 483 MobiDBLite consensus disorder prediction 46 69 - -
Chy02g02540 483 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 481 - -
Chy02g02540 483 SMART pkinase_C_6 415 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Chy02g02540 483 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Chy02g02540 483 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
Chy02g02540 483 MobiDBLite consensus disorder prediction 99 136 - -
Chy02g02540 483 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 481 - -
Chy02g02540 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Chy02g02540 483 Gene3D Phosphorylase Kinase; domain 1 149 456 - -
Chy02g02540 483 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02540 483 MobiDBLite consensus disorder prediction 102 120 - -
Chy02g02540 483 SMART serkin_6 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02540 483 MobiDBLite consensus disorder prediction 49 69 - -
Chy02g02540 483 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Chy02g02540 483 Pfam Protein kinase domain 151 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02540 483 ProSitePatterns Protein kinases ATP-binding region signature. 156 187 IPR017441 GO:0005524
Chy02g02540 483 SUPERFAMILY Protein kinase-like (PK-like) 147 474 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02540 Chy-Chr2:28692266 Chy09g00965 Chy-Chr9:12338370 2.60E-70 dispersed
Chy02g02540 Chy-Chr2:28692266 Chy01g00553 Chy-Chr1:3963768 1.66E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71103 PF00069 Pkinase 2.10E-71 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02540 K04688 - csv:101214867 951.044