Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02547 ATGGCCACGGTTCCTGATCTCTTCCGCCGCAACGGACTTGTTGGGGTTTCCGACGAGTCGAAACAGAAGAGTTCCGGTTCCACTCAGCTTCATGTTCTTGCTGTTGATGATAGTTTTGTTGATCGGAAGGTTATTGAACGGTTGTTGAAGATTTCGTCATGTGAAGTGACTGTTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATTTGGGTTTGGATGGGGAAACTAATTCTGTTCAGTTTAGTAGTGCTTTGAAGGTGAATCTCATTATTACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGTATCGACAGTTGTTTAAAGGAAGGGGCTGAAGAATTCATAGTAAAGCCAGTGAAACTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGGAAGAAAATTGATCTTAAGAGGAAACCCCATCTCGATCATGATCACAACCCATTGTCTCCGGCCTCTCCAATGCCATCGATGACAGCTTTTGACCAATGCCAAGGATTCAAGCAACGATCACCGCCGTCGTTACGACCGTCGCCGATCATACATTCATCAAAGAAACCTAGATCAGAGATTTTGGGGGTTCTTGATCCAAGATCGGAGATTTTGTGCCGCAAAAAGTCCAAATACACAAGTTTCTTTGGAGAAGTAATGAAAGAGATGGAAAACAGAAATGGTGTACAAGAAGCTTCCAAGGGAAAGGCCAACCCTGGCAAAGCTACGATTTTGGCTCTTGGGAAGGCATTCCCTCCACAACTTGTCCTTCAAGACTACCTAGTCGATGGCTATTTCAAGGACACGAGCTGCGATGATATTGACCTCAAGCAGAAACTCACTCGATTATGTAATTTTAATCTTTCACTCTTTCTCCTTCTTTTTGGAAATATCTCATACTTCATTGATCTGAAAGAACTGAAGGGAACTTCTAAGATGTGTAATCCTTTAACAGGCAAGACAACAACAGTAAAAACTAGATACGTGGTGATGTCAGAAGAGATCTTGAAGAAGTACCCAGAGCTAGCAAAGGAAGGTCAACCGACCATAAAGCAGAGACTGGAGATTTGCAACAAAGCTGTGACAGAAATGGCCATTGAAGCCTCACAAGCTGCCATTAACAACTGGGGAAGGCCAGCTTCAGACATTACCCACTTAGTCTATGTTTCTTCAAGTGAAGCTCGCTTACCTGGTGGCGATCTCTTCCTAGCAAGGGGCCTTGGACTCAGCCCTCAAACCCAACGAGTCATGCTTTACTTCACCGGTTGCTCGGGTGGCGTGGCAGGCCTTAGAGTCGCTAAAGACTTAGCTGAAAACAACCCAGGAAGCCGAGTCCTGCTTGTCACCTCTGAAACCACCATTATCGGCTTCAAGCCACCGAGTGCAAATCGTCCATACGATCTCGTAGGGGTGGCACTATTTGGGGATGGTGCAGGGGCGATGGTAATTGGGAGAGACCCTTTTTTAGGCATTGAACGACCACTCTTTGAACTCCACACAACAACCCAGAAATTCATTCCAGATACTCAGAACATAATCGATGGGAAACTGTCGGAGGAAGGTATTAGTTTCACAATAACAAGAGAACTTCCTCAGATAATTGAAGACAACATCGAAAATTTCTGTGAGACATTTCTTCAAACACTTGGGTTACATGAGAAAGAATACAACAAAATATTCTGGGCAGTACATCCAGGTGGGCCAGCGATATTGAACAGGTTGGAGAAGAGGCTTGAACTGTTACCTGAGAAGCTGACAGCGAGCCGACGAGCTCTGATGGACTATGGAAATGCGAGTAGTAACACGATCGTGTACGTATTGGAATACATGATGGAAGAAAGCTTGAAAATGAAGATGGAAGGTAGGAAAATTGAGGAATGGGGATTGATTCTGGCGTTTGGACCTGGGATTTCATTTGAAGGGATTCTGGCGAGGAATCTTGCCGTATGA 2043 44.3 MATVPDLFRRNGLVGVSDESKQKSSGSTQLHVLAVDDSFVDRKVIERLLKISSCEVTVVESGRSALQYLGLDGETNSVQFSSALKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIDLKRKPHLDHDHNPLSPASPMPSMTAFDQCQGFKQRSPPSLRPSPIIHSSKKPRSEILGVLDPRSEILCRKKSKYTSFFGEVMKEMENRNGVQEASKGKANPGKATILALGKAFPPQLVLQDYLVDGYFKDTSCDDIDLKQKLTRLCNFNLSLFLLLFGNISYFIDLKELKGTSKMCNPLTGKTTTVKTRYVVMSEEILKKYPELAKEGQPTIKQRLEICNKAVTEMAIEASQAAINNWGRPASDITHLVYVSSSEARLPGGDLFLARGLGLSPQTQRVMLYFTGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGFKPPSANRPYDLVGVALFGDGAGAMVIGRDPFLGIERPLFELHTTTQKFIPDTQNIIDGKLSEEGISFTITRELPQIIEDNIENFCETFLQTLGLHEKEYNKIFWAVHPGGPAILNRLEKRLELLPEKLTASRRALMDYGNASSNTIVYVLEYMMEESLKMKMEGRKIEEWGLILAFGPGISFEGILARNLAV* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28742346 28746428 - Chy2G048140.1 Chy02g02547 221995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02547 680 MobiDBLite consensus disorder prediction 165 216 - -
Chy02g02547 680 Gene3D - 29 179 - -
Chy02g02547 680 CDD CHS_like 273 674 - -
Chy02g02547 680 MobiDBLite consensus disorder prediction 186 212 - -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, C-terminal domain 528 678 IPR012328 -
Chy02g02547 680 SUPERFAMILY Thiolase-like 270 519 IPR016039 GO:0016746
Chy02g02547 680 SUPERFAMILY CheY-like 29 154 IPR011006 -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, N-terminal domain 351 518 IPR001099 -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, N-terminal domain 261 316 IPR001099 -
Chy02g02547 680 MobiDBLite consensus disorder prediction 165 180 - -
Chy02g02547 680 PANTHER TYPE III POLYKETIDE SYNTHASE B 265 316 - -
Chy02g02547 680 PANTHER TYPE III POLYKETIDE SYNTHASE B 350 678 - -
Chy02g02547 680 SMART REC_2 30 155 IPR001789 GO:0000160
Chy02g02547 680 Pfam Response regulator receiver domain 32 151 IPR001789 GO:0000160
Chy02g02547 680 Gene3D - 526 678 IPR016039 GO:0016746
Chy02g02547 680 SUPERFAMILY Thiolase-like 525 676 IPR016039 GO:0016746
Chy02g02547 680 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 350 678 IPR011141 GO:0009058|GO:0016747
Chy02g02547 680 ProSiteProfiles Response regulatory domain profile. 31 159 IPR001789 GO:0000160
Chy02g02547 680 CDD REC_typeA_ARR 32 154 - -
Chy02g02547 680 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 265 316 IPR011141 GO:0009058|GO:0016747
Chy02g02547 680 Gene3D - 241 525 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02547 - - - csv:101210994 748.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02547 Chy-Chr2:28742346 Chy08g00289 Chy-Chr8:6751093 8.29E-44 dispersed
Chy06g00492 Chy-Chr6:3325491 Chy02g02547 Chy-Chr2:28742346 3.67E-07 transposed
Chy06g01449 Chy-Chr6:15614599 Chy02g02547 Chy-Chr2:28742346 7.62E-95 transposed
Chy07g00596 Chy-Chr7:5331078 Chy02g02547 Chy-Chr2:28742346 7.78E-169 transposed
Chy10g01363 Chy-Chr10:17856425 Chy02g02547 Chy-Chr2:28742346 2.94E-50 transposed
Chy03g00788 Chy-Chr3:10786315 Chy02g02547 Chy-Chr2:28742346 1.04E-42 transposed
Chy10g00941 Chy-Chr10:14996171 Chy02g02547 Chy-Chr2:28742346 3.02E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy10g00941 . 1 175 Response Regulator Gene Family AT1G59940 65.4 5.8e-56 214.9
Chy02g02547 . 9 158 Response Regulator Gene Family AT1G59940 62.3 8.4e-47 184.5
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G59940 58.7 3.1e-41 166.0
Chy10g00941 . 18 185 Response Regulator Gene Family AT1G10470 67.9 4.9e-55 211.5
Chy02g02547 . 29 167 Response Regulator Gene Family AT1G10470 66.2 4.6e-45 178.3
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G10470 56.7 2.9e-39 159.1
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy02g02547 . 23 163 Response Regulator Gene Family AT5G62920 73.8 9.5e-51 196.8
Chy10g00941 . 25 175 Response Regulator Gene Family AT5G62920 68.2 3.0e-49 191.8
Chy10g01363 . 2 171 Response Regulator Gene Family AT5G62920 52.0 8.3e-39 157.1
Chy08g00289 . 17 164 Response Regulator Gene Family AT5G62920 54.7 7.8e-37 150.6
Chy02g02547 . 29 162 Response Regulator Gene Family AT1G19050 74.6 2.6e-49 192.2
Chy10g00941 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Chy10g01363 . 9 153 Response Regulator Gene Family AT1G19050 55.2 1.0e-37 153.7
Chy08g00289 . 8 270 Response Regulator Gene Family AT2G41310 51.0 1.4e-56 216.5
Chy10g01363 . 3 149 Response Regulator Gene Family AT2G41310 66.0 3.1e-48 188.7
Chy03g00788 . 20 160 Response Regulator Gene Family AT2G41310 62.7 1.4e-43 173.3
Chy10g00941 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Chy02g02547 . 28 159 Response Regulator Gene Family AT2G41310 61.9 8.2e-41 164.1
Chy08g00289 . 8 270 Response Regulator Gene Family AT3G57040 51.5 8.2e-60 227.3
Chy10g01363 . 8 149 Response Regulator Gene Family AT3G57040 70.4 4.5e-50 194.9
Chy03g00788 . 20 194 Response Regulator Gene Family AT3G57040 53.6 3.4e-45 178.7
Chy10g00941 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Chy02g02547 . 25 159 Response Regulator Gene Family AT3G57040 61.8 1.0e-41 167.2
Chy02g02547 . 24 182 Response Regulator Gene Family AT1G74890 69.3 4.3e-52 201.4
Chy10g00941 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Chy10g01363 . 2 159 Response Regulator Gene Family AT1G74890 57.6 1.5e-41 166.4
Chy10g00941 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Chy02g02547 . 29 160 Response Regulator Gene Family AT2G40670 57.8 5.3e-37 151.0
Chy10g00941 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Chy02g02547 . 24 160 Response Regulator Gene Family AT3G56380 58.0 1.4e-39 159.5
Chy10g01363 . 2 148 Response Regulator Gene Family AT3G56380 54.7 1.7e-37 152.5
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy12g01526 . 35 584 Response Regulator Gene Family AT5G61380 50.5 4.1e-143 505.4
Chy08g00806 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.1e-55 213.4
Chy09g01472 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Chy08g00806 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.8e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17616 PF00195 Chal_sti_synt_N 2.70E-79 CL0046 Chy TR