Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02547 ATGGCCACGGTTCCTGATCTCTTCCGCCGCAACGGACTTGTTGGGGTTTCCGACGAGTCGAAACAGAAGAGTTCCGGTTCCACTCAGCTTCATGTTCTTGCTGTTGATGATAGTTTTGTTGATCGGAAGGTTATTGAACGGTTGTTGAAGATTTCGTCATGTGAAGTGACTGTTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATTTGGGTTTGGATGGGGAAACTAATTCTGTTCAGTTTAGTAGTGCTTTGAAGGTGAATCTCATTATTACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGTATCGACAGTTGTTTAAAGGAAGGGGCTGAAGAATTCATAGTAAAGCCAGTGAAACTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGGAAGAAAATTGATCTTAAGAGGAAACCCCATCTCGATCATGATCACAACCCATTGTCTCCGGCCTCTCCAATGCCATCGATGACAGCTTTTGACCAATGCCAAGGATTCAAGCAACGATCACCGCCGTCGTTACGACCGTCGCCGATCATACATTCATCAAAGAAACCTAGATCAGAGATTTTGGGGGTTCTTGATCCAAGATCGGAGATTTTGTGCCGCAAAAAGTCCAAATACACAAGTTTCTTTGGAGAAGTAATGAAAGAGATGGAAAACAGAAATGGTGTACAAGAAGCTTCCAAGGGAAAGGCCAACCCTGGCAAAGCTACGATTTTGGCTCTTGGGAAGGCATTCCCTCCACAACTTGTCCTTCAAGACTACCTAGTCGATGGCTATTTCAAGGACACGAGCTGCGATGATATTGACCTCAAGCAGAAACTCACTCGATTATGTAATTTTAATCTTTCACTCTTTCTCCTTCTTTTTGGAAATATCTCATACTTCATTGATCTGAAAGAACTGAAGGGAACTTCTAAGATGTGTAATCCTTTAACAGGCAAGACAACAACAGTAAAAACTAGATACGTGGTGATGTCAGAAGAGATCTTGAAGAAGTACCCAGAGCTAGCAAAGGAAGGTCAACCGACCATAAAGCAGAGACTGGAGATTTGCAACAAAGCTGTGACAGAAATGGCCATTGAAGCCTCACAAGCTGCCATTAACAACTGGGGAAGGCCAGCTTCAGACATTACCCACTTAGTCTATGTTTCTTCAAGTGAAGCTCGCTTACCTGGTGGCGATCTCTTCCTAGCAAGGGGCCTTGGACTCAGCCCTCAAACCCAACGAGTCATGCTTTACTTCACCGGTTGCTCGGGTGGCGTGGCAGGCCTTAGAGTCGCTAAAGACTTAGCTGAAAACAACCCAGGAAGCCGAGTCCTGCTTGTCACCTCTGAAACCACCATTATCGGCTTCAAGCCACCGAGTGCAAATCGTCCATACGATCTCGTAGGGGTGGCACTATTTGGGGATGGTGCAGGGGCGATGGTAATTGGGAGAGACCCTTTTTTAGGCATTGAACGACCACTCTTTGAACTCCACACAACAACCCAGAAATTCATTCCAGATACTCAGAACATAATCGATGGGAAACTGTCGGAGGAAGGTATTAGTTTCACAATAACAAGAGAACTTCCTCAGATAATTGAAGACAACATCGAAAATTTCTGTGAGACATTTCTTCAAACACTTGGGTTACATGAGAAAGAATACAACAAAATATTCTGGGCAGTACATCCAGGTGGGCCAGCGATATTGAACAGGTTGGAGAAGAGGCTTGAACTGTTACCTGAGAAGCTGACAGCGAGCCGACGAGCTCTGATGGACTATGGAAATGCGAGTAGTAACACGATCGTGTACGTATTGGAATACATGATGGAAGAAAGCTTGAAAATGAAGATGGAAGGTAGGAAAATTGAGGAATGGGGATTGATTCTGGCGTTTGGACCTGGGATTTCATTTGAAGGGATTCTGGCGAGGAATCTTGCCGTATGA 2043 44.3 MATVPDLFRRNGLVGVSDESKQKSSGSTQLHVLAVDDSFVDRKVIERLLKISSCEVTVVESGRSALQYLGLDGETNSVQFSSALKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIDLKRKPHLDHDHNPLSPASPMPSMTAFDQCQGFKQRSPPSLRPSPIIHSSKKPRSEILGVLDPRSEILCRKKSKYTSFFGEVMKEMENRNGVQEASKGKANPGKATILALGKAFPPQLVLQDYLVDGYFKDTSCDDIDLKQKLTRLCNFNLSLFLLLFGNISYFIDLKELKGTSKMCNPLTGKTTTVKTRYVVMSEEILKKYPELAKEGQPTIKQRLEICNKAVTEMAIEASQAAINNWGRPASDITHLVYVSSSEARLPGGDLFLARGLGLSPQTQRVMLYFTGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGFKPPSANRPYDLVGVALFGDGAGAMVIGRDPFLGIERPLFELHTTTQKFIPDTQNIIDGKLSEEGISFTITRELPQIIEDNIENFCETFLQTLGLHEKEYNKIFWAVHPGGPAILNRLEKRLELLPEKLTASRRALMDYGNASSNTIVYVLEYMMEESLKMKMEGRKIEEWGLILAFGPGISFEGILARNLAV* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28742346 28746428 - Chy2G048140.1 Chy02g02547 221995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02547 680 MobiDBLite consensus disorder prediction 165 216 - -
Chy02g02547 680 Gene3D - 29 179 - -
Chy02g02547 680 CDD CHS_like 273 674 - -
Chy02g02547 680 MobiDBLite consensus disorder prediction 186 212 - -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, C-terminal domain 528 678 IPR012328 -
Chy02g02547 680 SUPERFAMILY Thiolase-like 270 519 IPR016039 GO:0016746
Chy02g02547 680 SUPERFAMILY CheY-like 29 154 IPR011006 -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, N-terminal domain 351 518 IPR001099 -
Chy02g02547 680 Pfam Chalcone and stilbene synthases, N-terminal domain 261 316 IPR001099 -
Chy02g02547 680 MobiDBLite consensus disorder prediction 165 180 - -
Chy02g02547 680 PANTHER TYPE III POLYKETIDE SYNTHASE B 265 316 - -
Chy02g02547 680 PANTHER TYPE III POLYKETIDE SYNTHASE B 350 678 - -
Chy02g02547 680 SMART REC_2 30 155 IPR001789 GO:0000160
Chy02g02547 680 Pfam Response regulator receiver domain 32 151 IPR001789 GO:0000160
Chy02g02547 680 Gene3D - 526 678 IPR016039 GO:0016746
Chy02g02547 680 SUPERFAMILY Thiolase-like 525 676 IPR016039 GO:0016746
Chy02g02547 680 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 350 678 IPR011141 GO:0009058|GO:0016747
Chy02g02547 680 ProSiteProfiles Response regulatory domain profile. 31 159 IPR001789 GO:0000160
Chy02g02547 680 CDD REC_typeA_ARR 32 154 - -
Chy02g02547 680 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 265 316 IPR011141 GO:0009058|GO:0016747
Chy02g02547 680 Gene3D - 241 525 IPR016039 GO:0016746
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02547 Chy-Chr2:28742346 Chy08g00289 Chy-Chr8:6751093 8.29E-44 dispersed
Chy06g00492 Chy-Chr6:3325491 Chy02g02547 Chy-Chr2:28742346 3.67E-07 transposed
Chy06g01449 Chy-Chr6:15614599 Chy02g02547 Chy-Chr2:28742346 7.62E-95 transposed
Chy07g00596 Chy-Chr7:5331078 Chy02g02547 Chy-Chr2:28742346 7.78E-169 transposed
Chy10g01363 Chy-Chr10:17856425 Chy02g02547 Chy-Chr2:28742346 2.94E-50 transposed
Chy03g00788 Chy-Chr3:10786315 Chy02g02547 Chy-Chr2:28742346 1.04E-42 transposed
Chy10g00941 Chy-Chr10:14996171 Chy02g02547 Chy-Chr2:28742346 3.02E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17616 PF00195 Chal_sti_synt_N 2.70E-79 CL0046 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02547 - - csv:101210994 748.814