Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02548 ATGGCCGCCAATCTTCTTCTTCCACTACCGGACTCTTCTTCAAACGCTTACAGCCGGAAGCAGAAATCTCTCGGCCTCCTTTGCTCCAATTTTTTGAGACTGTATGATCGAGATGACATTCAGTTGATCAGCCTCGACAATGCCGCATCTCGGCTAGGTGTTGAAAGACGACGGATCTATGATATTGTTAACGTTTTAGAAAGTGTTGGTATTCTGTGTAGAAAAGCGAAGAATCAATATCGTTGGATAGGATATTCTGGCATTCCTAAAGCACTACGGAAACTTAAGGAAGAAGATTTGAAGGGAAATAGCTCCTGCGCTATAGATGCCAATGACCGTTCAAGTTTGATAGATGATGAAGAAGAAACATGTTCAGATCTTACATCTGTGAGCCATGATTCAATCTCTGTCATATCTAAATCTTCAACGTCAGTGAGATGTGTGGCATCAGAGAATCGGAGGGAAAAATCACTTGCACTATTAACGCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAGCGCCCATCTGATTTCACTTGACGAAGCTGCAAAATTACTGCTTGGTAATGGTGAAAGTGTATCGATAATGAGAAGCAAAGTCAGACGCCTTTACGATATCGCGAATGTGTTGGCAGCACTTCATCTTATTGAAAAGACACAAACCGATGGTACTAGAAAACCTGCGTTCAAGTGGCTAGGATGGAGAAGTTTAGTCGAAAATTGTCGTGCAGGCAAGCTGCTTCGATGTGATTCAAATAAAAGGAGTTTCGGAAGCGATATAACCAACAACAACTTGAAGAGAAACAGATTGCCATATTCATTTGATCTGAATAAGAGCCCTAATTCCCAGCAACAGCGGCATGTGCAGCTTGAGGGTTGTGGGGTTGAAGTAACCGGTGGCGAATTAGAGAAAGATCTGAATTCTAAGAGCTTCAAATTTGGACCCTTTTCACCCAGTGTTAGAGTGGAAGCTAGAGCATCAAAAATCGAAGCAAAACGGAGTCGTAATAACTGGGTGAGCCTCGCCTCGACTTACTGCCCTCAGTATCAGAATCAAGGGTCCTTATACGTTGGCTGTGCCAACTCCGATCTCCGGAGGCCATCGTCATGGTGTATTATACTACCATTGTAA 1131 43.15 MAANLLLPLPDSSSNAYSRKQKSLGLLCSNFLRLYDRDDIQLISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYRWIGYSGIPKALRKLKEEDLKGNSSCAIDANDRSSLIDDEEETCSDLTSVSHDSISVISKSSTSVRCVASENRREKSLALLTQNFVKLFVCSSAHLISLDEAAKLLLGNGESVSIMRSKVRRLYDIANVLAALHLIEKTQTDGTRKPAFKWLGWRSLVENCRAGKLLRCDSNKRSFGSDITNNNLKRNRLPYSFDLNKSPNSQQQRHVQLEGCGVEVTGGELEKDLNSKSFKFGPFSPSVRVEARASKIEAKRSRNNWVSLASTYCPQYQNQGSLYVGCANSDLRRPSSWCIILPL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28752355 28754698 + Chy2G048150.1 Chy02g02548 221996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02548 376 PANTHER TRANSCRIPTION FACTOR E2F 12 355 IPR015633 GO:0000978|GO:0006357
Chy02g02548 376 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Chy02g02548 376 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Chy02g02548 376 SUPERFAMILY Winged helix DNA-binding domain 155 234 IPR036390 -
Chy02g02548 376 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Chy02g02548 376 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Chy02g02548 376 SUPERFAMILY Winged helix DNA-binding domain 18 83 IPR036390 -
Chy02g02548 376 Gene3D - 148 234 IPR036388 -
Chy02g02548 376 Gene3D - 14 86 IPR036388 -
Chy02g02548 376 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 12 355 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02548 Chy12g01298 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01393 Chy-Chr3:16688957 Chy02g02548 Chy-Chr2:28752355 1.16E-10 transposed
Chy05g00206 Chy-Chr5:1743675 Chy02g02548 Chy-Chr2:28752355 1.23E-10 transposed
Chy08g00971 Chy-Chr8:16991819 Chy02g02548 Chy-Chr2:28752355 6.46E-10 transposed
Chy12g01298 Chy-Chr12:17432697 Chy02g02548 Chy-Chr2:28752355 1.08E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17617 PF02319 E2F_TDP 1.10E-18 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02548 K09391 - csv:101210753 636.721