Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02552 ATGGGTGGCAATGGCAAATCCAGGTGGAAGTTCCTCTTCCCCCATCGTCGTAATTCTAGGCTTCAATCCAACGATCCTCCTAAAGAGTTCCTTTGTCCTGTTTCTGGTTCGTTAATGGCAGACCCTGTTGTCGTTTCTTCTGGACAGACGTTTGACCGTGTTTCTGCTCAGGTTTGTAGAAATTTAGGGTTCTCCCCTGTGCTAGATGATGGTTCTAAGCCGGATTTCACTACTGTGATTCCTAATTTAGCTATGAAGAAGACAATTCTTCATTGGTGTGAGAAGTCCGGTGCTCGGAATATTCAACCTCCTGATTACACCTCCGTTGAAAGCCTTGTTTCTGCATTGATGGAGAAGGAGAAGCCTCAAGGCGGGATTGGGGATTCCTCGGATAGGGATTTGTTGGAGGGGGTATCGGATTTGCCGCCTGTAGATTTCTCGCACGCTGCGACGGAGTATGGACACCGTCCCGAACGGTTTTACACCAGCTCGTCGGAGGAATCGGTCGTCGTTGGGGGAAGCCCGGGACCGTTCACGACTCGACCTGCGTGTTATTACTCATTTTCGTCTTCTTCGTCTGAAACTGTGGAAAACGAAGCGCTCGTACAAACCCTAGGCCCGAATTCATCGATTTCCGAAGATGAGAAGCATATTTTAACGAAGCTCGAGAGTTCCGATGTGTTTCAGCAAGAAGAAGGCGTTGTTTCGCTGAGAAAAATCACGAAAGCCGATGAGAATATTAGGGTTTCTCTTTGTACGCCTCGGATTCTTTCCTCTCTCCACCGGTTGATAAAGTCGAGATACCCCAAAGTACAGATCAACGCCGTCGCCTCTCTTGTAAATCTATCCCTCGAAAAGCCGAACAAATTAAAGATCGCACGGTCAGGATTGGTTCCAGACTTAATCGATGTGCTTAAAGGAGGTCATTCCGAAGCTCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTAGCTTTAGAGGATGACAACCGTATGACGATCGGAGTTCTCGGCGCGCTACCGCCACTCCTGTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCAGCTCTGTGTCTCTACAACCTAACAATGATTCAGAGCAACCGAGTGAAACTTGTGAAACTCGGGGCCGTAACGACTCTACTTTCCATGGTGAAATCAAGAAACTCAACGAATCGACTGCTATTAATCCTCTGTAACATGGCCGTGTGCCAGGAGGGAAGGTCCGCAATGCTAGACGCCAACGCCGTCGAGCTTTTGGTCGGAATGCTGAGGGAGAAAGAGCTGAACTCCGAATCAACCCGCGAGAACTGCGTTGCGGCATTGTACGCACTGAGTTATGGAAGCATGAGATTCAAAGGATTAGCGAAGGAAGCTGGAGCAATGGAGGTTTTGAGGGAGATTGTCGAGAGTGGAAGCGAGAGGGCGAGAGAGAAAGCAAAGAAGATATTGGTGAGAATGAGAACGAGAGGGACATACGATGAAGACGACGACGACGACGATCCCGACGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCGACTCGGTACCCAATCGGTGGTGGAAGATTTCCCAGCTCAGCCAATACGATGCCGTTTTAA 1611 49.72 MGGNGKSRWKFLFPHRRNSRLQSNDPPKEFLCPVSGSLMADPVVVSSGQTFDRVSAQVCRNLGFSPVLDDGSKPDFTTVIPNLAMKKTILHWCEKSGARNIQPPDYTSVESLVSALMEKEKPQGGIGDSSDRDLLEGVSDLPPVDFSHAATEYGHRPERFYTSSSEESVVVGGSPGPFTTRPACYYSFSSSSSETVENEALVQTLGPNSSISEDEKHILTKLESSDVFQQEEGVVSLRKITKADENIRVSLCTPRILSSLHRLIKSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPDLIDVLKGGHSEAQEHAAGALFSLALEDDNRMTIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNMAVCQEGRSAMLDANAVELLVGMLREKELNSESTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIVESGSERAREKAKKILVRMRTRGTYDEDDDDDDPDGESSFERGGLSSTRYPIGGGRFPSSANTMPF* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28783066 28784676 - Chy2G048190.1 Chy02g02552 222000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02552 536 Gene3D - 396 501 IPR011989 -
Chy02g02552 536 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Chy02g02552 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 98 IPR013083 -
Chy02g02552 536 PANTHER U BOX DOMAIN-CONTAINING 1 525 - -
Chy02g02552 536 Pfam U-box domain 27 95 IPR003613 GO:0004842|GO:0016567
Chy02g02552 536 SUPERFAMILY RING/U-box 16 100 - -
Chy02g02552 536 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 333 IPR000225 GO:0005515
Chy02g02552 536 SMART arm_5 406 449 IPR000225 GO:0005515
Chy02g02552 536 SMART arm_5 285 325 IPR000225 GO:0005515
Chy02g02552 536 SMART arm_5 326 366 IPR000225 GO:0005515
Chy02g02552 536 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Chy02g02552 536 MobiDBLite consensus disorder prediction 494 536 - -
Chy02g02552 536 Gene3D - 213 395 IPR011989 -
Chy02g02552 536 CDD RING-Ubox 31 67 - -
Chy02g02552 536 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 525 - -
Chy02g02552 536 SUPERFAMILY ARM repeat 217 489 IPR016024 -
Chy02g02552 536 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02552 Chy-Chr2:28783066 Chy11g00210 Chy-Chr11:1971633 2.78E-09 dispersed
Chy09g00841 Chy-Chr9:11215621 Chy02g02552 Chy-Chr2:28783066 8.20E-06 transposed
Chy12g01293 Chy-Chr12:17396405 Chy02g02552 Chy-Chr2:28783066 0 wgd
Chy02g02552 Chy-Chr2:28783066 Chy09g00312 Chy-Chr9:2675397 6.95E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02552 - - csv:101213423 1003.43