Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02560 ATGAATATGTTTGGTGCTGTCGGCGTCTCACCCTCTCGTCTCAAGTCCCTCACGCTTCGTAGACCTCCGTCGCCACTGCTTCCTCGCTCGCCACGGGAGCTCAGATCGTTGCCGCTTGGCGGAGACAAGCCTTGTGCGAGCTTACCGGCTCCTTCTGTGTTCAGCCCGTCGTTCAGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGTCTTTCAATTCAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGGCAGATGCTGAATGCACAAAATCTAAAGTTCCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACTGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGA 672 49.11 MNMFGAVGVSPSRLKSLTLRRPPSPLLPRSPRELRSLPLGGDKPCASLPAPSVFSPSFSSVVRPLPAELESFNSSSISAAMFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28841649 28853777 + Chy2G048270.1 Chy02g02560 222008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02560 223 TIGRFAM L29: ribosomal protein uL29 143 203 IPR001854 GO:0003735|GO:0005840|GO:0006412
Chy02g02560 223 CDD Ribosomal_L29_HIP 142 203 - -
Chy02g02560 223 SUPERFAMILY Ribosomal protein L29 (L29p) 139 206 IPR036049 GO:0003735|GO:0005840|GO:0006412
Chy02g02560 223 Gene3D - 112 212 IPR038340 -
Chy02g02560 223 MobiDBLite consensus disorder prediction 16 41 - -
Chy02g02560 223 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 117 203 IPR010729 GO:0003735|GO:0005761|GO:0006412
Chy02g02560 223 PANTHER RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED 81 223 IPR010729 GO:0003735|GO:0005761|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02560 K17428 MRPL47, NCM1; large subunit ribosomal protein L47 - csv:101210906 266.159
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011635 2 2 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30