Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02561 ATGCATGGGCGTCGAGGTGAGGACTGGAAACGGATTCGGCACATGTGGACAGTCCCCACACCTGCTACTCAGATCCTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCTAATTCCTTTTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCTCCTTTTATTGGCATAATCCGGTGGTTGACGGCTGGTAAGGAGAATAAGTTGAAGTTAGGTGTAAATTGGCTTTATCGATCTTCTGAACTAAGGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTCCTTCCAAAAGACGTTGAACTTCCATCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAAGTGATCAGGATTATATTAATGAACGTCAAGAAGAAGTAGATCAATTGTTATATAAGACAAGATTAGAAATGCATGCTTCAGTGCAACCCGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCGACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACTAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAAAGAGAGCGTATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCAGAGATTGCAAAATTTGCTGAAAAAGGAGGTTTAGTTGATTCTGAAGCCGTCGAGAAATTGGTGCAGCTTATGCTGACGGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTTATAGCTGCTACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTTCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAATCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTGCCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAACATTAATGATGCGAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCATCTGATGTTTCTCATGGAGGGAGAAATCAAGATGCATCCTCTGAAGTGGCTGTGAAGAGCTCGGTTTCTCAGTTTTCTACGTCCAAATCTGCTTCAGTTAAGCTTGCCCAGGATGATAGCGTTACCAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCAACAGCAAGCATTAACTCGAAAGATGGTTCTTCCAGAAATCCGGGTGTTTGTGGCACAACTGATCTTGTTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAACAATAGTCAATCATGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAAGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTCCTGTTCTCTCAGGGGGTCAACGAGATGTCGGGTCGGGTAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATCTGATGGCCCTATTGGTGAGGGGAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCAGAGAAACATGATCAACTTGATCACAGTAAGACCGATACTTGTCAACCTAATATTACTGGAGATGTGAATGCAGAGTCCTGGCAGAATAGTGATGTAAAGGATACGGTGATTGGCGCTGATGGTGACGATGGATCTCCTACTGCTGTAAATGGTGAAGAGCGCTGTCGGGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCATTATCATTGGTGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAACCTAGTATGCCTACCTCACTCACGGATAATGTTGGAATGAACTTACTCGCAAGTGTAGCAGCCGTTGAAATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACACAAGGAAATATCACTGCAACGGACCGTTCTTCTAGAGGTAGTGATTGTAAGATCAAGGCATCTTGTCCTGAAGAGGATGCTAGAGATATAGATGGTACTGAGCAGGGTGTAATCACCAGTTCCTTGGGAGGTAAAAATGTGGAAGGAAGGTCTGCTTCACAATCTGAAGAGAAAGTTGTTGGAGATCTGAATGGTCATTTAAAATCTCCTGGTGTAAACTTGCAGCAAACTGCTGTGCCGTTGGCAGATGGGTGTATGAAAATAAACGACCCTGGAGGTCCTGCCTCTCCTGCTAGGGTACCAGAGAAGGGCTTTGAGAGCAAGGGGGTTAAACCAGTTAAGGGCAGAAAGACAGCTGATGTAGTTGATGGAGATAGCAGCCCAGAATCAAAACCAAAACCGAGCAGTTCTTTTCCTGATGGTGGCATGGTTGGTGATGGTATCTCGAATCGGGAAGTTGAAATGGATGTTCTCGATGAGTCTTTGCATCGGCGGCAAGAAGTTGAGGGCAATACAAATAATAGACTGAATGGTATTAATACAGCAGACCAAAGGTTATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAATGACGGACTACTTCAGGCTTCAGGCTCTTCGAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAAACATCAAAGTGATTTAGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGTCTTGTGTTCAGCTACCAACCATGAGGATGAGCATGTGGAGGAGAATTTGGAGCCTAAAGAGAACACAGAGAGAAGTGGAGGGCAGACACATCATGGGCAGTCTATTATTTCTCCTGTTCACGAAACGGAGCAGCCTAAGCCGTCCAAGAGATCCAAATTAGCTGGTGTTGAAGCAGAAGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTCACACCGTCTGGTTGTTTGACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTACAGTATCTAATGTGGCGAACAACATTCCTTCTTCAATTACAGTTGCAGCTGCGGCGAAAGGAGGTTTCGTACCACCTGATGATCTATTGAGGAGCAAGGGGGAACTTGGTTGGAAAGGATCAGCAGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCTCTAGGTCTTGCAACCACTCCACTTGCTGATGTTTCAGCCAGCAAAATTTCTCGACCCCCATTGGATATTGATTTGAATGTTCCCGATGAAAGGATTCTTGAGGACATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGCCTGACCTGGGACATGGTATAGGCACCACACAAGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGAGGCTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGTCCTATTGTCGATGAGGCCACTACTGAACCATCGATATTTCCTCAGCATGCCAGAAGCAGTATGCCAGCCCAGCCATCAGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTCCCATCATGGTTTCCTCCCGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAACAGTCGTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCAGTGCCTTTTCCTTCTGCACCTTTTCAATATCCTGTCCTGTCTTTTGGAAATAGCTTTCCTCTATCTTCAGCCACGTTTTCAGGTAATGCAACAGCATACGTTGATTCATCATCCGGTAGCAGGCTTTGCTTTCCAGCAGTCCCTTCACAGTTTTTAGGTCCTCCTGGTACAGTTTCAACGCCATATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCCGGTCCTGTAGTTCCAGACATTGAAGGAGGAAGAGAGGAATCGTCATCCTTGGTACCAAGGCAACTATCTGTTGCTAGTTCGCAGGTCACAGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAAAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTCGTAG 4851 44.53 MHGRRGEDWKRIRHMWTVPTPATQILEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELRLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLSDQDYINERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKFAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKSVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSDVSHGGRNQDASSEVAVKSSVSQFSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPATASINSKDGSSRNPGVCGTTDLVQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPIGEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSEKHDQLDHSKTDTCQPNITGDVNAESWQNSDVKDTVIGADGDDGSPTAVNGEERCRAAEDVTVSKATPLSLVNDHKNGKLHEASFSSINALIESCIKCSEPSMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITATDRSSRGSDCKIKASCPEEDARDIDGTEQGVITSSLGGKNVEGRSASQSEEKVVGDLNGHLKSPGVNLQQTAVPLADGCMKINDPGGPASPARVPEKGFESKGVKPVKGRKTADVVDGDSSPESKPKPSSSFPDGGMVGDGISNREVEMDVLDESLHRRQEVEGNTNNRLNGINTADQRLSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGEKDDETSADVKLEKHQSDLDPMPSESRGLGVLCSATNHEDEHVEENLEPKENTERSGGQTHHGQSIISPVHETEQPKPSKRSKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLTTVQLISPLPLTVSNVANNIPSSITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVSASKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKPDLGHGIGTTQGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIEAPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPAQPSVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSAPFQYPVLSFGNSFPLSSATFSGNATAYVDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGGREESSSLVPRQLSVASSQVTAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSWS* 1617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28855542 28861474 + Chy2G048280.1 Chy02g02561 222009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02561 1616 MobiDBLite consensus disorder prediction 639 667 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 556 575 - -
Chy02g02561 1616 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Chy02g02561 1616 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1615 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1083 1097 - -
Chy02g02561 1616 Gene3D - 34 258 IPR043151 -
Chy02g02561 1616 SMART TFS2_5 333 412 IPR003617 GO:0005634
Chy02g02561 1616 SMART BAH_4 47 162 IPR001025 GO:0003682
Chy02g02561 1616 MobiDBLite consensus disorder prediction 889 951 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 592 617 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1064 1130 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1529 1545 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1099 1115 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1023 1046 - -
Chy02g02561 1616 CDD TFIIS_I 335 411 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1005 1051 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 416 691 - -
Chy02g02561 1616 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1615 - -
Chy02g02561 1616 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 424 IPR035441 -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1064 1082 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 907 930 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 188 240 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 223 240 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 417 544 - -
Chy02g02561 1616 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 414 IPR035441 -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1527 1573 - -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 193 222 - -
Chy02g02561 1616 Pfam BAH domain 49 156 IPR001025 GO:0003682
Chy02g02561 1616 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Chy02g02561 1616 MobiDBLite consensus disorder prediction 1005 1019 - -
Chy02g02561 1616 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02561 - - - csv:101210258 3078.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00232 Chy-Chr3:2177869 Chy02g02561 Chy-Chr2:28855542 3.00E-06 transposed
Chy04g00407 Chy-Chr4:3648687 Chy02g02561 Chy-Chr2:28855542 5.05E-11 transposed
Chy09g01227 Chy-Chr9:14353938 Chy02g02561 Chy-Chr2:28855542 2.56E-24 transposed
Chy02g02561 Chy-Chr2:28855542 Chy04g01484 Chy-Chr4:21497553 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17619 PF01426 BAH 2.10E-08 No_clan Chy TR