Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02573 ATGGCTGCTCGAGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCAATCAATTGGAAGAGGTATCATACCTGTGTACATCCCCTGCATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTGGATAATGGACTTGCGGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCGGTTCTTGCCCTTCTGCTATATCCGTTTCTTTGGGCCTGGACTGCCATTGGTACTATATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGGTTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTTGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGAATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTTAGGTTAAAGGCTGTTCCAACGGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCACGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTTGATCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGACCATCTGCAAGTGTTCTTACGGCCAACCGTTATGTGGGATCTCAACCTTCCAGCCAAAGTTATTTGGTGAGATTGCAAGGTCTGCTTCGACCTGTTCGCACCGAAGAAAATGATGCACACGGTGATTTAGGGCCTGCTAGTGCTTTAGAAGCTGCTGAGAATGGGTCTGCACATGAACAAACCATACCAGAACGGTCTCCTATCTCAATACTCGCCTATTCATCCGCCTATGAAGGAAGATTATTGGACATGTGCTTTTTGCAGAACAAATGTTGCAATTCTTTCGGAGAATCCTTAATGCTGACAGGTTCTTACTATGGGGAACAGGACGGCGTCAACTCAAGGTGGGGTCATAAATTAAAAATGTCTTTGGTTTGGATGCGCACTCCATTCTCCACCAGCAACGTGGCAACTACCAAGTGGAGCAACCTCTACGAACAAATGTGGTGA 1341 46.16 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTIWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVLTANRYVGSQPSSQSYLVRLQGLLRPVRTEENDAHGDLGPASALEAAENGSAHEQTIPERSPISILAYSSAYEGRLLDMCFLQNKCCNSFGESLMLTGSYYGEQDGVNSRWGHKLKMSLVWMRTPFSTSNVATTKWSNLYEQMW* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28940268 28944725 + Chy2G048400.1 Chy02g02573 222021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02573 446 SUPERFAMILY RING/U-box 217 284 - -
Chy02g02573 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Chy02g02573 446 SMART ring_2 235 275 IPR001841 -
Chy02g02573 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842|GO:0010182
Chy02g02573 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 - -
Chy02g02573 446 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Chy02g02573 446 CDD RING-H2_RNF111_like 234 278 - -
Chy02g02573 446 Pfam Ring finger domain 234 276 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02573 Chy12g01273 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02573 Chy-Chr2:28940268 Chy05g00006 Chy-Chr5:45088 2.01E-14 dispersed
Chy04g01690 Chy-Chr4:23312547 Chy02g02573 Chy-Chr2:28940268 4.09E-12 transposed
Chy09g00829 Chy-Chr9:10983666 Chy02g02573 Chy-Chr2:28940268 6.54E-11 transposed
Chy12g01273 Chy-Chr12:17310095 Chy02g02573 Chy-Chr2:28940268 2.26E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02573 K16284 - csv:101208939 759.985