Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02578 ATGCAGATGGACTGTTGTTTTATTCAATTTAAACAGCGTGGATCCTCCATTAAGGAGTGTAGAACTATAGTTCATAAAAGAATTCACTGTTCTTCACAGCCTCCTCCTCCAGCTTGGCCTGGACAAGCGGTCGTACCACCGGGGTATAAGAAATGGGACGGCCGGAAGCCTATCTCCATTCTAGGATCCACGGGTTCCATTGGAACTCAAACATTGGATATTGTGGCAGAGCACCCCGAGAAATTTAAAGTTGTCGGACTTGCAGCCGGCTCTAATATAACTCTCCTTGCAGATCAGGTGAAAACATTTAAACCTCAATTAGTTGCTGTTAGAAACGAGTCCTTAATTGATGAGCTCAAAGAGGCTTTGGCTGATCTTGATGAGAAGCCTGAGATTATCCCTGGTGAGCAGGGAGTAATTGAGGTTGCAAGACACCCGGATGCGGTCACTGTTGTTACAGGAATAGTAGGCTGTGCGGGACTAAAGCCTACTGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCCAATAAAGAGACTCTTATTGCTGGTGGTCCCTTTGTTCTTCCCCTTGCCCACAAGCACAATGTAAAGATCCTTCCCGCTGATTCAGAACATTCAGCCATATTCCAGTGTATTCAGGGATTGCCCGAGCGTGCACTTCGCCGCATTATTTTGACCGCATCTGGTGGGGCTTTCAGGGACTTGCCAGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCATCCTAACTGGAGCATGGGAAAGAAGATCACTGTCGACTCCGCCACTCTTTTCAACAAGGGTCTAGAAGTCATTGAAGCACACTATTTGTTTGGAGCTGAATATGATGACATTGAGATTGTAATCCATCCACAGTCCATCATACATTCAATGATAGAAACACAGGATTCATCTGTTTTAGCGCAATTGGGTTGGCCTGATATGCGCTTGCCCATAGCATACACCATAACATGGCCAGAAAGATTATACTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGTTCGCTCACGTTCAAAACTCCAGACAATGTAAAATACCCATCCATGGATCTGGCATACGCTGCTGGACGGGCGGGTGGAACCATGACTGGAGTCCTTAGTGCAGCTAACGAGAAGGCGGTGGAAATGTTCATTGATGAAAAAATCGGCTACTTGGATATTTTCAAGGTTGTGGAGCTAACATGTGACAAGCATCAAAACGAATTGATCACTACACCTTCCCTTGAGGAGATCGTACATTACGACCTATGGGCTAGGGATTACGCTGCAAATTTGCAGTCGTCTTCCTCTTTTAGTCCTGTAGCCGCATAA 1359 45.62 MQMDCCFIQFKQRGSSIKECRTIVHKRIHCSSQPPPPAWPGQAVVPPGYKKWDGRKPISILGSTGSIGTQTLDIVAEHPEKFKVVGLAAGSNITLLADQVKTFKPQLVAVRNESLIDELKEALADLDEKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPERALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPIAYTITWPERLYCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHQNELITTPSLEEIVHYDLWARDYAANLQSSSSFSPVAA* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28985651 28988917 + Chy2G048450.1 Chy02g02578 222026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02578 452 PIRSF Dxp_reductoisomrs 55 448 IPR003821 GO:0008299|GO:0030604|GO:0046872
Chy02g02578 452 Gene3D - 360 445 - -
Chy02g02578 452 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 16 445 IPR003821 GO:0008299|GO:0030604|GO:0046872
Chy02g02578 452 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 16 445 - -
Chy02g02578 452 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 56 439 IPR003821 GO:0008299|GO:0030604|GO:0046872
Chy02g02578 452 Gene3D - 49 204 - -
Chy02g02578 452 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 348 442 IPR036169 -
Chy02g02578 452 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 58 186 IPR013512 GO:0070402
Chy02g02578 452 Pfam DXP reductoisomerase C-terminal domain 315 436 IPR026877 -
Chy02g02578 452 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 200 283 IPR013644 GO:0005515
Chy02g02578 452 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 58 441 IPR003821 GO:0008299|GO:0030604|GO:0046872
Chy02g02578 452 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 204 IPR036291 -
Chy02g02578 452 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 181 318 - -
Chy02g02578 452 Coils Coil 109 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02578 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] - csv:101207716 872.848
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32