Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02595 ATGATGGGTATCGAAATTTGTGGAAAAATAGACAAAGTAAATGGGAAAGGACTGAGTTATAAGGAATTTGTAGAACGATACATGGAGAAGAACAAGCCTGTGGTGTTGACAGGTCTCATGGATGATTGGAAGGCTTGCAGTGATTGGGTCGACGAGAATGGGCAGCCAAATCTAAGTTTATTTTCCACCCATTTCGGGAAATCCAGGGTACAGGTTGCAGATTGCAGTACTAAAGAATTTACAGATCAGAAGAGAGTAGAAATGTCTGTTTCAGAGTTCATTGATCAATGGTGTAAGGAGCCCATACAGGAGCATGGCCTTAGCTCAAACAATGGACTTACAGACAAGTCTGTACTATACTTAAAAGACTGGCATTTTGTGAAGGAATATCTAAATTATACAGCATATTCAACTCCACACTTTGTTTGTGATGACTGGCTGAACCTATACCTTGACAGCTACCGTATGCACAGGGATCCTGACTCTTACCAAGAGAAAGATGAAATAAGTTGCTCCGACTATCGTTTCGTTTACATGGGAGCAAAAGGTTCTTGGACTCCACTTCATGCTGACGTTTTCAGGTCATACAGCTGGTCAGCAAATGTTTGTGGAAAGAAACAGTGGTTTCTTTTGCCTCCTTCTCAATCTCATCTTGTATTCGACAGGAATATGAAGGCCTGTATTTATAATATCTTTGATGATATAAGTGAAATTTTGTTTCCTGGTTTTAAGAAGGCTACCTGGTTGGAATGTATTCAAGAACAGAACGAAATTATATTTGTGCCAAGTGGCTGGTATCATCAAGTTCATAATCTGGATGACACCGTATCAATAAACCACAATTGGTTTAACTCCTACAATCTCTGTTGGGTGTTGGACTTGATGTTGCGGGACTATAATGAAGCCAAGGAGTACATAGAAGACATTAGAGATATATGTGATGATTTTGAAGGTCTCTGTCAGCGCAACCTTGCAGCTAACACAGGCATGAACTTCTATGACTTCTTCATCTTCTTAGCACGCTTTTCGCTCGCGAATTCGGTGGTACTTGACACTCTAGCTAGAGATGCTGAAAATATTGCTGGGATTGAGAGCATATCTCCAATAATTCAGCAGTTGGTCCAGAATCTTTCTTCAATACAGAAGATTGCCTTGAAAATGAAATCCCTGGAATGTTTTTCAGGAGACCAAGGATTCATGTTGGATCTAGTAGAAACACACAAAAATCCCAAGTTTTCTAAACTTTGTTATTCATTAATTCGAACTTGTGAGTCCATACACAATCGACAAGTTTTGAGCTTTTGTTCAAAGACAGTCGCAACACAAGATTCTAGGACTTCGATAGTCATTCAAAACTTTTGTGATGCTGTTTCGTCTCCCCAAGATCTTGTCAAATATATTGACACGGTCTTAACTGAACACACAAGCTTAGAATCATCGGAATGA 1446 39.49 MMGIEICGKIDKVNGKGLSYKEFVERYMEKNKPVVLTGLMDDWKACSDWVDENGQPNLSLFSTHFGKSRVQVADCSTKEFTDQKRVEMSVSEFIDQWCKEPIQEHGLSSNNGLTDKSVLYLKDWHFVKEYLNYTAYSTPHFVCDDWLNLYLDSYRMHRDPDSYQEKDEISCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKQWFLLPPSQSHLVFDRNMKACIYNIFDDISEILFPGFKKATWLECIQEQNEIIFVPSGWYHQVHNLDDTVSINHNWFNSYNLCWVLDLMLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFIFLARFSLANSVVLDTLARDAENIAGIESISPIIQQLVQNLSSIQKIALKMKSLECFSGDQGFMLDLVETHKNPKFSKLCYSLIRTCESIHNRQVLSFCSKTVATQDSRTSIVIQNFCDAVSSPQDLVKYIDTVLTEHTSLESSE* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29163603 29167760 - Chy2G048620.1 Chy02g02595 222043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02595 481 Gene3D Cupin 3 284 - -
Chy02g02595 481 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 474 - -
Chy02g02595 481 ProSiteProfiles JmjC domain profile. 148 299 IPR003347 -
Chy02g02595 481 SMART cupin_9 145 297 IPR003347 -
Chy02g02595 481 Pfam Cupin-like domain 22 284 IPR041667 -
Chy02g02595 481 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 474 - -
Chy02g02595 481 SUPERFAMILY Clavaminate synthase-like 12 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02595 - - - csv:101207085 994.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02595 Chy-Chr2:29163603 Chy04g01824 Chy-Chr4:24488678 1.01E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17621 PF13621 Cupin_8 5.80E-24 CL0029 Chy TR