Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02596 ATGACAGACCCAACAGGTTCATCGGCTTCAGACAAGGTCCAAGAACCCTCTTGTTCATCGGACCAGAAAAATACTAAACGGGATTTTTCCACTGCAATTTTGGAACGGAAGAAATCTCCAAATCGCTTAGTTGTTGATGAGGCTATAAATGATGATAACTCTGTCGTTTCTTTGCATCCTGCCACCATGGAGAAGTTGCAGTTCTTTAGAGGAGATACTATTTTATTAAAGGGGAAGAAGCGGAGAGATACAGTGTGTATTGTACTTGCCGATGAACAATGTGAAGAGTCAAAAATCAGAATGAATAAAATTGAAAGAGGTAATCTCAGAGTTCGTCTTGGAGACGTTGTATCTGTCCATCAGTGTCCTGACGTGAAGTATGGAAAGCGGGTTCATATCCTCCCTATTGACGATACAATAGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTACTTCTTGGAAGCATATCGACCGGTAAGGAAGGGTGACCTGTTCTTAGTCCGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAAACGGACCCTGGTGAATACTGTGTTGTTGCACCTGATACCGAGATCTTCTGTGAGGGAGAACCTGTCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGATATGATGATGTTGGAGGTGTCAGGAAGCAAATGGCTCAGATCCGTGAATTAGTCGAATTACCACTTAGACACCCACAACTCTTCAAAGCAATTGGTGTAAAGCCTCCAAAAGGGATATTGCTATATGGGCCTCCTGGTTCTGGAAAAACTCTTATAGCAAGAGCTGTTGCTAACGAGACAGGTGCATTCTTCTTTCTTATTAATGGGCCGGAAATAATGTCAAAGTTAGCTGGTGAGAGCGAAAGTAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCCCCCTCGATTATATTTATTGATGAGCTTGATTCCATTGCTCCAAAGAGGGAGAAAACGCATGGAGAAGTGGAAAGACGTATTGTGTCCCAACTTCTTACCTTGATGGATGGCCTGAAGACTCGAGCACATGTTATTGTTATCGGAGCAACTAATAGACCCAATTCAATTGACCCTGCTTTGAGGAGATTCGGAAGATTTGATCGGGAGATTGATATTGGTGTACCTGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCAGAGGATGTTGATCTTGAGAGAGTTGCAAGGGATACACATGGTTATGTTGGTGCCGACCTAGCCGCTCTTTGCACTGAAGCAGCACTCCAGTGTATTAGGGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATAGATGCTGAGGTTTTGAATTCCATGGCTGTATCCAATGAACACTTCCAAACAGCTTTAGGGTCTTCTAATCCATCAGCCTTGCGGGAAACTGTTGTGGAGGTTCCAAATGTGTCGTGGGATGATATTGGTGGGTTGGAAAACGTTAAAAGAGAGCTCCAGGAGCTTTTGCCTCAGTTTTTTTTCCCTCGCCAAACTCATCTCCGTGTGGTTGTTTTGTGGCAGACTGTTCAATACCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTCGGCATGTCACCATCTAAAGGTGTTCTCTTTTATGGTCCCCCTGGCTGTGGTAAAACGCTACTTGCTAAGGCAATTGCCAATGAATGCCAGGCAAACTTTATAAGTGTGAAAGGACCGGAGTTGCTGACGATGTGGTTCGGTGAAAGTGAGGCAAACGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTTGATGAGCTCGATTCTATAGCAACTCAGCGTGGTAGTTCAGTTGGAGATGCTGGTGGTGCAGCAGACAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACTGTGTTCATAATTGGGGCAACAAACAGGCCAGACATTATCGACCCCGCACTGCTGAGGCCGGGACGTCTAGACCAATTAATATACATTCCACTACCTGACGAGTCTTCTCGTCTTCAAATCTTCAAAGCGTGTCTGCGAAAGTCACCAGTGGCGAAAGATGTCAATCTGTCAGCTCTTGCAGGGTATACCCATGGCTTCAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATCGAGAAGGATCTCGAAAGGGAGAGAAAGCAGGGTGAAAACTCAGAAGCCATGGAAGAAGACGAGATCGACGATGTCTCAGAGATTAAGGCAGCACATTTTGAGGAATCAATGAAGTATGCTCGCCGAAGTGTGAGCGATGCAGACATCAGGAAGTACCAGCTCTTTGCTCAGACCCTACAGCAATCTCGTGGAATTGGTTCTGAGTTTCGGTTCCCTGATCGAAACGACAATGTGGCAGCAGGAGCTGCCGACCCCTATGCTTCCACCATGGGTGCTGGAGATGATGATGATCTTTATAGCTGA 2520 44.72 MTDPTGSSASDKVQEPSCSSDQKNTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKGKKRRDTVCIVLADEQCEESKIRMNKIERGNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKAIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQELLPQFFFPRQTHLRVVVLWQTVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVNLSALAGYTHGFSGADITEICQRACKYAIRENIEKDLERERKQGENSEAMEEDEIDDVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRNDNVAAGAADPYASTMGAGDDDDLYS* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29168226 29172994 + Chy2G048630.1 Chy02g02596 222044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02596 839 CDD AAA 244 386 - -
Chy02g02596 839 Gene3D - 19 124 - -
Chy02g02596 839 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Chy02g02596 839 SUPERFAMILY ADC-like 38 122 IPR009010 -
Chy02g02596 839 Gene3D - 388 479 - -
Chy02g02596 839 SMART CDC48_2_2 142 208 IPR004201 -
Chy02g02596 839 Pfam Cell division protein 48 (CDC48), domain 2 144 207 IPR004201 -
Chy02g02596 839 ProSitePatterns AAA-protein family signature. 653 671 IPR003960 GO:0005524|GO:0016887
Chy02g02596 839 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 17 813 - -
Chy02g02596 839 MobiDBLite consensus disorder prediction 1 27 - -
Chy02g02596 839 SMART CDC48_N_2 42 125 IPR003338 -
Chy02g02596 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 478 IPR027417 -
Chy02g02596 839 Gene3D - 480 683 IPR027417 -
Chy02g02596 839 MobiDBLite consensus disorder prediction 805 839 - -
Chy02g02596 839 MobiDBLite consensus disorder prediction 1 30 - -
Chy02g02596 839 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 43 799 IPR005938 GO:0016787
Chy02g02596 839 SMART AAA_5 546 685 IPR003593 -
Chy02g02596 839 SMART AAA_5 253 389 IPR003593 -
Chy02g02596 839 Gene3D - 125 221 - -
Chy02g02596 839 SUPERFAMILY Cdc48 domain 2-like 124 216 IPR029067 -
Chy02g02596 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 796 IPR027417 -
Chy02g02596 839 Coils Coil 736 756 - -
Chy02g02596 839 Pfam ATPase family associated with various cellular activities (AAA) 550 683 IPR003959 GO:0005524|GO:0016887
Chy02g02596 839 Pfam ATPase family associated with various cellular activities (AAA) 257 386 IPR003959 GO:0005524|GO:0016887
Chy02g02596 839 Gene3D - 687 795 - -
Chy02g02596 839 Pfam AAA+ lid domain 705 744 IPR041569 -
Chy02g02596 839 Pfam AAA+ lid domain 409 451 IPR041569 -
Chy02g02596 839 PANTHER AAA-FAMILY ATPASE 17 813 - -
Chy02g02596 839 Gene3D - 222 386 IPR027417 -
Chy02g02596 839 Pfam Cell division protein 48 (CDC48), N-terminal domain 42 123 IPR003338 -
Chy02g02596 839 CDD AAA 546 683 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02596 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1587.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01657 Chy-Chr1:22493843 Chy02g02596 Chy-Chr2:29168226 2.44E-48 dispersed
Chy02g02596 Chy-Chr2:29168226 Chy04g02055 Chy-Chr4:26092398 0 dispersed
Chy06g01166 Chy-Chr6:10345355 Chy02g02596 Chy-Chr2:29168226 5.47E-37 dispersed
Chy01g00038 Chy-Chr1:263149 Chy02g02596 Chy-Chr2:29168226 7.44E-37 transposed
Chy02g00427 Chy-Chr2:2693547 Chy02g02596 Chy-Chr2:29168226 1.16E-29 transposed
Chy12g01238 Chy-Chr12:17058690 Chy02g02596 Chy-Chr2:29168226 3.86E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99