Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02599 ATGAAGGATACTCTTAGATACTTAGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCTACTGCTGAACAAGTCTCTCTATTTCCTTCTCCTTCTTCTCCTTCTTCTTCTACTTCTCAACTTACTGCCATTATCACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGAGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGACAGCAAGAGACTTGAAAAAGGCAGCTCAAGTTAAAGAAGCAATTCAAAAAGAAAGCCCTGAGGCTGAGATTATTGTGTTTGAAATCGATCTCAGTTCATTGGCTTCTGTCCAAAGCTTTTGTAATCAGTTTCTTTCTCTTGGACTCCCACTTCACATTCTCATAAATAATGCTGGAGTTTTCTCTAAGAATTTGGAGTTTTCTGAAGACAAAGTTGAGTTGACATTTGCAACAAATTATTTGGGACATTATTTACTAACAGAGAGGCTGTTAGAGAAAATGATAGAAACAGCAGCCAAGACAGGAATTGAAGGAAGGATCATCAACGTTTCATCGGTGGTTCATGGCTGGGTGAAGAAAGATGGTTTAAGCTTTCGTCAAATGCTCAACCCAAACAGTTACAATGGCACTTGTGCATATGCTCAATCAAAACTAGCCAATATCTTGCATGCTAAGGAACTATCAAGGCAACTTCAGGGAAGAAATGCCAGAGTCACCATAAATGCAGTTCATCCAGGAATTGTAAAAACTGCCATCATTAGAGCTCATAAGGGCTTTATCACAGATTCTTTGTTTTTTATGGCATCAAAGTTACTTAAAACGACAAGTCAGGGAGCATCAACAACATGCTACGTAGCACTGAGTTCGCAAACTGAAGGAAAGAGTGGAAAATTTTACGCAGATTGTAACGAGACTAACTGCTCATCCCTAGCCAATGATGAGTTGGAAGCACAAAAGTTATGGACTCAAACTCGCAACTTAATCAATAGACGACTAAGCAAACTTCCCTCCTAG 1005 40.2 MKDTLRYLAGIPGPSGYGSKSTAEQVSLFPSPSSPSSSTSQLTAIITGATSGIGAETARVLAKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCNQFLSLGLPLHILINNAGVFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHGWVKKDGLSFRQMLNPNSYNGTCAYAQSKLANILHAKELSRQLQGRNARVTINAVHPGIVKTAIIRAHKGFITDSLFFMASKLLKTTSQGASTTCYVALSSQTEGKSGKFYADCNETNCSSLANDELEAQKLWTQTRNLINRRLSKLPS* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29191419 29195950 - Chy2G048660.1 Chy02g02599 222047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02599 334 PRINTS Glucose/ribitol dehydrogenase family signature 119 130 IPR002347 -
Chy02g02599 334 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Chy02g02599 334 PRINTS Glucose/ribitol dehydrogenase family signature 210 229 IPR002347 -
Chy02g02599 334 PRINTS Glucose/ribitol dehydrogenase family signature 43 60 IPR002347 -
Chy02g02599 334 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Chy02g02599 334 PANTHER RETINOL DEHYDROGENASE 4 329 - -
Chy02g02599 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 303 IPR036291 -
Chy02g02599 334 Pfam short chain dehydrogenase 43 184 IPR002347 -
Chy02g02599 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 229 IPR002347 -
Chy02g02599 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 IPR002347 -
Chy02g02599 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 IPR002347 -
Chy02g02599 334 Gene3D - 33 330 - -
Chy02g02599 334 CDD retinol-DH_like_SDR_c_like 43 318 - -
Chy02g02599 334 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 4 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02599 - - - csv:101205419 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01211 Chy-Chr1:14356994 Chy02g02599 Chy-Chr2:29191419 2.66E-21 dispersed
Chy02g02599 Chy-Chr2:29191419 Chy09g01296 Chy-Chr9:14933351 7.21E-109 dispersed
Chy10g00769 Chy-Chr10:13801049 Chy02g02599 Chy-Chr2:29191419 1.62E-13 dispersed
Chy02g02599 Chy-Chr2:29191419 Chy09g01373 Chy-Chr9:15537496 5.32E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57