Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02604 ATGATAAAGGCGTTAAGGATATGTGCTAACATGAACAGTAGAGATGTATTTCAAAGAATATCTTGGGCAAGGATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCAGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTGGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAAATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGGCCAGCAGCCTCGGCACTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAAGTGGATATTATAATCATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAGCACTTCTGGAAATAACATCAATGAAGGAGGACGAGATGGAAATATTTGA 627 44.66 MIKALRICANMNSRDVFQRISWARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQASSLGTRPRALDQYHTSSTSGYYNHLPAFPMAYPLPWNESTSGNNINEGGRDGNI* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29255861 29256571 - Chy2G048710.1 Chy02g02604 222052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02604 208 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Chy02g02604 208 Coils Coil 113 140 - -
Chy02g02604 208 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Chy02g02604 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 207 - -
Chy02g02604 208 PANTHER ELONGATED PETIOLULE 1 25 207 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02604 Chy12g01247 CCT
Chy02g02604 Chy12g01247 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00112 Chy-Chr2:785712 Chy02g02604 Chy-Chr2:29255861 9.36E-37 dispersed
Chy02g02604 Chy-Chr2:29255861 Chy05g00814 Chy-Chr5:11625989 4.64E-60 dispersed
Chy11g01987 Chy-Chr11:25787609 Chy02g02604 Chy-Chr2:29255861 7.08E-38 dispersed
Chy01g02202 Chy-Chr1:26529382 Chy02g02604 Chy-Chr2:29255861 3.61E-29 transposed
Chy09g00277 Chy-Chr9:2327540 Chy02g02604 Chy-Chr2:29255861 4.54E-29 transposed
Chy02g02604 Chy-Chr2:29255861 Chy04g01431 Chy-Chr4:20958581 2.64E-73 wgd
Chy02g02604 Chy-Chr2:29255861 Chy09g00359 Chy-Chr9:3119388 4.61E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17622 PF03195 LOB 3.80E-42 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02604 - - csv:101205890 373.629