Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02604 ATGATAAAGGCGTTAAGGATATGTGCTAACATGAACAGTAGAGATGTATTTCAAAGAATATCTTGGGCAAGGATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCAGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTGGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAAATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGGCCAGCAGCCTCGGCACTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAAGTGGATATTATAATCATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAGCACTTCTGGAAATAACATCAATGAAGGAGGACGAGATGGAAATATTTGA 627 44.66 MIKALRICANMNSRDVFQRISWARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQASSLGTRPRALDQYHTSSTSGYYNHLPAFPMAYPLPWNESTSGNNINEGGRDGNI* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29255861 29256571 - Chy2G048710.1 Chy02g02604 222052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02604 208 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Chy02g02604 208 Coils Coil 113 140 - -
Chy02g02604 208 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Chy02g02604 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 207 - -
Chy02g02604 208 PANTHER ELONGATED PETIOLULE 1 25 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02604 - - - csv:101205890 373.629
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02604 Chy12g01247 CCT
Chy02g02604 Chy12g01247 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00112 Chy-Chr2:785712 Chy02g02604 Chy-Chr2:29255861 9.36E-37 dispersed
Chy02g02604 Chy-Chr2:29255861 Chy05g00814 Chy-Chr5:11625989 4.64E-60 dispersed
Chy11g01987 Chy-Chr11:25787609 Chy02g02604 Chy-Chr2:29255861 7.08E-38 dispersed
Chy01g02202 Chy-Chr1:26529382 Chy02g02604 Chy-Chr2:29255861 3.61E-29 transposed
Chy09g00277 Chy-Chr9:2327540 Chy02g02604 Chy-Chr2:29255861 4.54E-29 transposed
Chy02g02604 Chy-Chr2:29255861 Chy04g01431 Chy-Chr4:20958581 2.64E-73 wgd
Chy02g02604 Chy-Chr2:29255861 Chy09g00359 Chy-Chr9:3119388 4.61E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00814 . 1 214 AS2 family AT1G65620 66.7 7.0e-68 253.8
Chy02g02604 CCT,ECH 27 202 AS2 family AT1G65620 54.0 3.4e-46 181.8
Chy04g01431 . 17 127 AS2 family AT1G65620 70.3 2.0e-43 172.6
Chy05g00814 . 4 138 AS2 family AT5G66870 68.4 1.7e-44 176.8
Chy02g02604 CCT,ECH 25 137 AS2 family AT5G66870 68.1 2.2e-39 159.8
Chy04g01431 . 21 127 AS2 family AT5G66870 68.2 2.8e-39 159.5
Chy05g00814 . 6 112 AS2 family AT2G23660 69.2 7.4e-40 161.4
Chy02g02604 CCT,ECH 32 137 AS2 family AT2G23660 64.2 1.8e-38 156.8
Chy04g01431 . 21 137 AS2 family AT2G23660 58.1 2.0e-37 153.3
Chy04g01431 . 18 128 AS2 family AT3G27650 84.7 1.9e-52 202.2
Chy02g02604 CCT,ECH 28 138 AS2 family AT3G27650 78.4 1.9e-47 185.7
Chy05g00814 . 3 112 AS2 family AT3G27650 68.2 6.9e-42 167.2
Chy12g01247 CCT,ECH 7 98 AS2 family AT3G27650 78.3 1.2e-38 156.4
Chy02g02604 CCT,ECH 27 137 AS2 family AT5G63090 93.7 4.0e-57 218.0
Chy04g01431 . 16 139 AS2 family AT5G63090 78.2 5.0e-52 201.1
Chy05g00814 . 3 112 AS2 family AT5G63090 74.5 2.0e-45 179.1
Chy12g01247 CCT,ECH 7 102 AS2 family AT5G63090 82.3 3.9e-44 174.9
Chy11g01024 . 14 117 AS2 family AT5G63090 67.3 1.2e-37 153.3
Chy11g01024 . 10 125 AS2 family AT2G30130 72.4 6.2e-45 177.6
Chy01g00877 . 17 128 AS2 family AT2G30130 69.6 2.2e-42 169.1
Chy02g02604 CCT,ECH 32 153 AS2 family AT2G30130 61.5 1.1e-38 156.8
Chy10g00333 . 9 120 AS2 family AT2G30130 67.0 7.3e-38 154.1
Chy05g00814 . 7 109 AS2 family AT2G30130 67.0 8.1e-37 150.6
Chy04g01431 . 22 125 AS2 family AT2G30130 65.4 1.1e-36 150.2
Chy11g01024 . 1 171 AS2 family AT1G31320 73.1 2.5e-61 231.9
Chy01g00877 . 19 132 AS2 family AT1G31320 76.3 5.9e-47 184.1
Chy10g00333 . 18 130 AS2 family AT1G31320 63.7 6.5e-38 154.1
Chy12g00474 . 11 119 AS2 family AT1G31320 72.1 5.5e-37 151.0
Chy02g02604 CCT,ECH 33 144 AS2 family AT1G31320 62.5 7.2e-37 150.6
Chy12g00863 CCT,ECH 22 137 AS2 family AT2G28500 70.7 6.3e-44 174.5
Chy11g01024 . 13 120 AS2 family AT2G28500 67.6 7.4e-37 151.0
Chy12g00863 CCT,ECH 22 137 AS2 family AT1G07900 65.5 2.2e-39 159.1
Chy11g01024 . 6 171 AS2 family AT1G16530 57.1 1.5e-47 186.0
Chy01g00877 . 21 127 AS2 family AT1G16530 68.5 3.3e-39 158.3
Chy10g00333 . 1 127 AS2 family AT2G30340 81.3 2.2e-56 216.1
Chy10g00333 . 2 127 AS2 family AT2G40470 87.3 2.7e-59 225.3
Chy11g01024 . 11 121 AS2 family AT2G40470 65.8 3.6e-40 161.8
Chy01g00877 . 23 127 AS2 family AT2G40470 67.6 2.6e-38 155.6
Chy03g00195 . 1 112 AS2 family AT3G11090 82.1 2.1e-46 182.2
Chy01g01472 . 6 117 AS2 family AT2G42440 70.5 2.3e-41 166.0
Chy04g01053 . 1 107 AS2 family AT2G42440 70.1 8.9e-41 164.1
Chy11g01987 . 29 138 AS2 family AT2G42440 65.2 2.7e-37 152.5
Chy01g01472 . 1 125 AS2 family AT3G58190 74.8 8.0e-49 190.7
Chy04g01053 . 4 162 AS2 family AT3G58190 55.2 1.0e-43 173.7
Chy11g01987 . 29 127 AS2 family AT3G58190 74.7 5.2e-40 161.4
Chy04g01052 . 30 132 AS2 family AT3G58190 70.9 1.7e-38 156.4
Chy06g00237 CCT 18 135 AS2 family AT3G58190 61.9 1.2e-36 150.2
Chy04g01052 . 30 269 AS2 family AT2G42430 50.2 1.8e-49 193.0
Chy11g01987 . 16 131 AS2 family AT2G42430 69.0 6.9e-41 164.5
Chy06g00237 CCT 16 126 AS2 family AT2G42430 65.8 2.4e-38 156.0
Chy01g01472 . 11 113 AS2 family AT2G42430 69.9 4.6e-37 151.8
Chy11g01987 . 29 221 AS2 family AT4G00220 64.1 6.8e-59 224.2
Chy06g00237 CCT 24 187 AS2 family AT4G00220 55.2 1.4e-43 173.3
Chy11g01986 CCT 10 193 AS2 family AT4G00220 51.8 3.9e-38 155.2
Chy11g01987 . 29 241 AS2 family AT2G45420 69.2 6.2e-72 267.7
Chy06g00237 CCT 24 197 AS2 family AT2G45420 55.5 1.3e-50 196.8
Chy01g01472 . 11 117 AS2 family AT2G45420 69.2 4.8e-40 161.8
Chy04g01052 . 31 127 AS2 family AT2G45420 77.3 2.4e-39 159.5
Chy04g01614 . 30 119 AS2 family AT2G45420 78.9 1.3e-37 153.7
Chy04g01614 . 30 143 AS2 family AT3G03760 78.9 8.7e-45 177.6
Chy11g01987 . 29 130 AS2 family AT3G03760 80.4 2.2e-40 162.9
Chy11g01987 . 29 139 AS2 family AT4G00210 73.0 1.3e-43 173.3
Chy06g00237 CCT 16 133 AS2 family AT4G00210 63.0 1.1e-40 163.7
Chy01g01472 . 1 115 AS2 family AT4G00210 61.7 8.3e-38 154.1
Chy11g01987 . 29 224 AS2 family AT2G45410 51.0 1.5e-46 183.0
Chy06g00237 CCT 11 143 AS2 family AT2G45410 60.4 6.3e-42 167.5
Chy10g00526 . 7 156 AS2 family AT5G06080 58.0 2.2e-44 175.6
Chy01g02202 . 30 138 AS2 family AT3G13850 76.1 2.1e-43 172.9
Chy02g02365 . 1 162 AS2 family AT1G68510 61.8 2.3e-54 209.1
Chy10g01149 . 1 136 AS2 family AT1G68510 64.7 1.1e-48 190.3
Chy02g00852 . 1 104 AS2 family AT1G68510 63.5 1.6e-39 159.8
Chy02g02365 . 1 140 AS2 family AT1G67100 71.8 1.7e-60 229.6
Chy10g01149 . 1 132 AS2 family AT1G67100 67.9 2.4e-51 199.1
Chy02g00852 . 1 110 AS2 family AT1G67100 66.4 3.7e-44 175.3
Chy02g02365 . 1 167 AS2 family AT3G02550 67.6 3.1e-63 238.8
Chy10g01149 . 1 141 AS2 family AT3G02550 64.8 2.8e-48 189.1
Chy02g00852 . 1 136 AS2 family AT3G02550 55.1 3.7e-40 162.2
Chy02g00852 . 1 234 AS2 family AT5G67420 57.5 9.4e-70 260.4
Chy07g00181 . 1 118 AS2 family AT5G67420 59.1 2.0e-40 162.9
Chy02g02365 . 3 112 AS2 family AT5G67420 61.8 2.7e-40 162.5
Chy10g01149 . 3 106 AS2 family AT5G67420 62.5 3.3e-38 155.6
Chy02g00852 . 1 234 AS2 family AT3G49940 59.7 8.4e-71 263.8
Chy02g02365 . 3 112 AS2 family AT3G49940 62.7 2.0e-40 162.9
Chy10g01149 . 3 106 AS2 family AT3G49940 65.4 5.5e-38 154.8
Chy02g00852 . 1 234 AS2 family AT4G37540 57.3 6.4e-68 254.2
Chy02g02365 . 3 113 AS2 family AT4G37540 63.1 5.7e-40 161.4
Chy10g01149 . 3 126 AS2 family AT4G37540 56.5 2.0e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004254 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17622 PF03195 LOB 3.80E-42 No_clan Chy TF