Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02625 ATGGGTGGAAAAAGTTCTAAGCATAGAAGCTCAAGACGGAATTCGTCTAGTCGGTCAAACTCACAGCAGTGGAATCATTATGGTTATCCGGAGTCGCCATATACTCAATCGAGAAGCACGCCGCAGTATGGGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAACAGTCTAGATCAGGTTACTGAGGCATTAGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTGCAAGATCATTCAACCGTAGAAGTTTGCATCATATTGGAGAAGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGGCAAACATTATCTTCCTTTGATGAGGATAATATGATTCCTTGCTTCGGTTTTGGAGATGCATCCACTCATGACCAAGAGGTTTTCAGCTTTTATTCCGATGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATACAAGGAACTGGTGCCGCATCTTCGACTCGCAGGACCTACATCTTTTGCACCTATCATCGAAATGGCTATCACAATTGTTGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCCGATGGTCAGGTTACAAGAAGTGTTGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATAGTGAAAGCTAGCAAATATCCCCTGTCGATCATACTAGTTGGAGTAGGAGATGGGCCTTGGGACATGATGAGGGAATTTGACGATAATATCCCAGCTCGGGCCTTCGATAACTTCCAATTTGTGAATTTCACAAACATAATGTTAAAGAATATAGATCGATCCAGAAAGGAAGCGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTACAAAGCAACACTGGAGCTTGGTCTTTTGGGTGTCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCGTTTTATGGACCTAGCATCCGAAAAACCTCAAACACAAGCAGTTCTCGCCCAACGCCACCCTCATTTAGTGGAGGTGCTCCTGGCCGAACCGCACCTCCTCTAAGTTCAGTTTCCGATGCCCATGCTTGTCCCATTTGCATCTCCAATGCTAAGGATATGGCTTTTGGCTGTGGACATCAGACATGTTGTGAATGTGGACAAGATCTTCAGCTGTGTCCCATATGCCGCAGCTTTATCGACACAAGGATAAAGCTTTATTAG 1299 44.88 MGGKSSKHRSSRRNSSSRSNSQQWNHYGYPESPYTQSRSTPQYGYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYSDERFCNGFEEVLGRYKELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASKYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNIDRSRKEAEFALAALMEIPSQYKATLELGLLGVSRGKAIDRIPLPPPFYGPSIRKTSNTSSSRPTPPSFSGGAPGRTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQLCPICRSFIDTRIKLY* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29377124 29379512 + Chy2G048920.1 Chy02g02625 222073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02625 432 Coils Coil 61 81 - -
Chy02g02625 432 SUPERFAMILY vWA-like 93 276 IPR036465 -
Chy02g02625 432 PANTHER RING-FINGER PROTEIN 1 432 - -
Chy02g02625 432 MobiDBLite consensus disorder prediction 15 46 - -
Chy02g02625 432 SUPERFAMILY RING/U-box 381 427 - -
Chy02g02625 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 432 IPR013083 -
Chy02g02625 432 SMART VWA_4 92 295 IPR002035 -
Chy02g02625 432 MobiDBLite consensus disorder prediction 351 367 - -
Chy02g02625 432 PANTHER COPINE FAMILY PROTEIN 1 1 432 - -
Chy02g02625 432 Pfam Zinc finger, C3HC4 type (RING finger) 387 426 - -
Chy02g02625 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Chy02g02625 432 Pfam Copine 117 330 IPR010734 -
Chy02g02625 432 CDD RING-HC_RGLG_plant 389 432 IPR045317 GO:0061630|GO:0070534
Chy02g02625 432 MobiDBLite consensus disorder prediction 1 61 - -
Chy02g02625 432 MobiDBLite consensus disorder prediction 348 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02625 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 842.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01094 Chy-Chr2:7703778 Chy02g02625 Chy-Chr2:29377124 9.43E-149 dispersed
Chy02g02625 Chy-Chr2:29377124 Chy06g00005 Chy-Chr6:22450 9.62E-21 dispersed
Chy02g00484 Chy-Chr2:2966940 Chy02g02625 Chy-Chr2:29377124 1.03E-151 transposed
Chy11g01051 Chy-Chr11:14999918 Chy02g02625 Chy-Chr2:29377124 6.05E-148 transposed
Chy10g00832 Chy-Chr10:14255706 Chy02g02625 Chy-Chr2:29377124 0 wgd
Chy02g02625 Chy-Chr2:29377124 Chy04g01413 Chy-Chr4:20787353 0 wgd
Chy02g02625 Chy-Chr2:29377124 Chy09g00375 Chy-Chr9:3282955 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136