Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02630 ATGACTACCAATCCTTCCTTCCTTCCCTGCAAAACTCCGTTCAAACGCCGCCGGAAAATGCCTTCACCTTCACCTTCACCTTCACCTTCCTCCAAACTCCTTCCCTTCTTGGCTTTTCTCTCCATCGTTGTCCATGTCCACGCTGGTCTGAATCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAACGACTTGGGCATTGACGGTCAACTCTCCTCTTCACCATGCCACAACGCCGGCGTGTTCTGCGAGCGGCGGCTCTCCAACAACGGCACTTATGTTTTGAGGATCACCAGGCTTATTTTCAACTCCAAAGGTCTCTCCGGTTCTCTTTCTCCGGCTATCGGCAGGCTCACGGAATTGAAAGAGCTTACGGTATCTAATAATCACCTCGTTGACCAAGTACCTTACCAAATCGTTGACTGCCGGAAACTGGAAATTCTCGATCTCCAAAACAACCAATTTTCTGGAGAAATTCCATCGGGATTGTCCTCGTTGATTCGTCTTCGAGTCATTGAACTTTCCTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGTATTTCCCCAACTTGGAAAGTCTTTCCATTGCCAATAATTACTTTACAGGGAAGATTCCAGCTTCAATTCGTTCTTTTCGTAACCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGCTCAACCTCTATACTGAAGGATGTTGAGTTCTACTCGGCTACTGAAGTTCCCAAGCGTTATATGTTAGCTGAAAATTCCAGTACGAACGGCAAGCAAAGAGCCACCGCTCCCGCCACAGCGCCGACTTCGAGCGCTCAAGCTCCAAATGCCGCACCTGTCCATAAGAATCGGAAAAATAAAGCAAAGAAGATAGCTTCTTGGATACTTGGGTTCATCGCTGGAGCAATTGCTGGAAGTTTGTCAGGATTTATCTTTTCTCTACTGTTTAAACTCGTAATAGCAGCTATAAAAGGAGGAAGCAAGAATTCCGGTCCATCAATCTTTGCTCCTAAACTGATAAAACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGCAGCTTATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCTGAATTACCGGAAAAAAGTGGGAAAATGTTTGCGATAAAGAAGATAACTCAACCTCCAAAGGATGCAGCGGAGTTAGCCGAAGAGGAAAGCAGGCATATGAGCAGGAAAATGCGTGTCTTGGTGATTGGGAAACTTCCATCTGATGAATTTTTTCAGAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCCGATAATCCTAGAGGAGCCATTGATCCGAAGCTCCTGGGGAATGGCTTGGAGGAGCAAATGCTTTTGGCCCTGAAAATTGCCTGCTTCTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTTAGATGCATGCTGACACAGATCAAGCACGATGTACCTGAAACTCCCTCTGAATGTGTCTAG 1524 45.21 MTTNPSFLPCKTPFKRRRKMPSPSPSPSPSSKLLPFLAFLSIVVHVHAGLNLDPSDLRAFSIIKNDLGIDGQLSSSPCHNAGVFCERRLSNNGTYVLRITRLIFNSKGLSGSLSPAIGRLTELKELTVSNNHLVDQVPYQIVDCRKLEILDLQNNQFSGEIPSGLSSLIRLRVIELSSNKFSGSLDFLKYFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSTSILKDVEFYSATEVPKRYMLAENSSTNGKQRATAPATAPTSSAQAPNAAPVHKNRKNKAKKIASWILGFIAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLEKDDALASLQLIGKGGCGEVYKAELPEKSGKMFAIKKITQPPKDAAELAEEESRHMSRKMRVLVIGKLPSDEFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGLEEQMLLALKIACFCTMDNPKERPNSKDVRCMLTQIKHDVPETPSECV* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29404259 29406247 + Chy2G048970.1 Chy02g02630 222078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02630 507 SUPERFAMILY L domain-like 73 231 - -
Chy02g02630 507 MobiDBLite consensus disorder prediction 255 281 - -
Chy02g02630 507 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 409 - -
Chy02g02630 507 MobiDBLite consensus disorder prediction 255 286 - -
Chy02g02630 507 MobiDBLite consensus disorder prediction 11 30 - -
Chy02g02630 507 SUPERFAMILY Protein kinase-like (PK-like) 358 409 IPR011009 -
Chy02g02630 507 Gene3D Ribonuclease Inhibitor 188 244 IPR032675 -
Chy02g02630 507 Gene3D Ribonuclease Inhibitor 61 187 IPR032675 -
Chy02g02630 507 Gene3D Phosphorylase Kinase; domain 1 343 414 - -
Chy02g02630 507 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 414 497 - -
Chy02g02630 507 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN-RELATED 414 497 - -
Chy02g02630 507 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN-RELATED 33 409 - -
Chy02g02630 507 Gene3D Transferase(Phosphotransferase) domain 1 415 501 - -
Chy02g02630 507 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515
Chy02g02630 507 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02630 - - - csv:101220500 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02630 Chy-Chr2:29404259 Chy04g01123 Chy-Chr4:17356339 9.33E-08 dispersed
Chy02g02630 Chy-Chr2:29404259 Chy10g00198 Chy-Chr10:4964620 1.84E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g869 . . . . Bpe12g00678 . . . . . . Cma11g00059 Car10g00073 Car11g00053 . . Cpe04g01593 Bhi02g00579 . . . . . . Cla06g01712 . . . . . . . . Cone13ag0190 Cone19ag0183 . . . . . . . . . . . . . Cmo10g00083 Cmo11g00061 . . . . . Cpe18g00880 . . . . . . . . . . . . . . Lsi06g01606 Csa01g00091 Chy02g02630 Cme02g02029
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010216 1 1 1 0 1 0 2 0 0 1 1 0 1 1 1 2 0 0 2 0 1 0 0 0 0 1 0 0 0 1 18