Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02631 ATGGCACAGGAAACGACGCCGCTTAGAATAGCCACACTCACAACTCCAAACACCGCCACCTGCTTGGCCGCCCATAACGGCCTCCTCTACTCCGGCGCTACCAACCAAATCGCCGTCTTCGATATAACCAACCACTTCACTCAAATCGACACTCTTTGCGTAAACGATGCTGCTTCGGGGTCCGTTAAATCCATCGCATTTGGGCCTTGGAAAGTCTTCACGGCTCATCAGGACTGCAAGATCAGAGTATGGAAGGTCACACGCTCGGGACCGCCACGTCACCGGCTTCTGGCTGCTCTCCCCACCGTTAAAGACCGGCTGTACCGGTTTATTTCGCCGCGGAATTATGTTCATGTACGGCGACACCGTAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTTAATGGAGGATTTGTGTACTCTGTTTCATGGGATCGGAGTTTAAAGGTTTGGAGTGCTTCTGACCATAAGTGTTTGTTGTCTGTCAAAGCTCACGAGGATGCAGTCAACGCTGTTGCTGTAGGGCAGAACGGCGTCGTGTATACTGGCGCTGCTGATGGGGTTATTGGAGTTTGGGAGGTCAGAGAGGGGAAGAAGAAGAAGAAGTATACGTTGGTTAGGACTTTGAACAACCACAAATCCACGGTAAATGCGATCGTACTAAACGAGGGAGGTTGGGCAATGTTTTCAGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGGGCTATATTGTGCTTGTATACTTTTCGAGACTTGTTAGTTAGTGGGTCGGAAGATAGGACGCTCAGGATTTGGAGAGGTGATGTTACAAATGGTTACCGATGTACGACTGTGATGGATGGACACAGGTCGCCGGTGAAATCGTTGGTTTTGGTTTCCGTCGAAGATCGTGAACGGAGTTTGATGATCTGTAGTGCTAGCTTGGATGGAGAAATACGAATGCGTGGCGCGGGACAATCTGATGCATATAAAAGGGTAAAACTAGCGGCAATTGGAAAACAGATCAAAAAGGCGTGGTGCGGGACAAGTCGAAATTTGAAACTTGAAAGTTGCAGCTTACAGACTTGCACTCCCCAGTTTCGATTCACCATGGAAGAGACCGGATTTCATCCTGATCTAATTCACGCCATTTTCAAGCTGGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATAATCCGGATGCTATGGATTGCGAGGTTGACGCTGGGGCTGGAACGTCCAAGAAAAGCAGGCCGATGTCAGCTAATGCAAATGCTCTTAAATTGAGCACTAAACTTGTACAGATTTTTATCTCAGAGGCTGTGCAGCGCACTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAACCCACTCATTTGGAGAGAGTTCTTCCGCAGTTACTACTGGATTTTTAA 1482 48.38 MAQETTPLRIATLTTPNTATCLAAHNGLLYSGATNQIAVFDITNHFTQIDTLCVNDAASGSVKSIAFGPWKVFTAHQDCKIRVWKVTRSGPPRHRLLAALPTVKDRLYRFISPRNYVHVRRHRKRLWIEHWDAVSGVVVNGGFVYSVSWDRSLKVWSASDHKCLLSVKAHEDAVNAVAVGQNGVVYTGAADGVIGVWEVREGKKKKKYTLVRTLNNHKSTVNAIVLNEGGWAMFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAILCLYTFRDLLVSGSEDRTLRIWRGDVTNGYRCTTVMDGHRSPVKSLVLVSVEDRERSLMICSASLDGEIRMRGAGQSDAYKRVKLAAIGKQIKKAWCGTSRNLKLESCSLQTCTPQFRFTMEETGFHPDLIHAIFKLEWSRRSLEREKNENNPDAMDCEVDAGAGTSKKSRPMSANANALKLSTKLVQIFISEAVQRTATIAEAEGISRIEPTHLERVLPQLLLDF* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29407143 29410643 - Chy2G048980.1 Chy02g02631 222079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Chy02g02631 493 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 338 IPR045182 -
Chy02g02631 493 Pfam WD domain, G-beta repeat 262 289 IPR001680 GO:0005515
Chy02g02631 493 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 296 340 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 6 41 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 253 290 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 207 246 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 160 198 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 48 85 IPR001680 GO:0005515
Chy02g02631 493 SMART WD40_4 113 157 IPR001680 GO:0005515
Chy02g02631 493 Pfam CENP-S associating Centromere protein X 440 493 IPR018552 GO:0006281|GO:0051382
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 289 - -
Chy02g02631 493 Gene3D - 3 104 IPR015943 GO:0005515
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 246 IPR001680 GO:0005515
Chy02g02631 493 ProSitePatterns Trp-Asp (WD) repeats signature. 185 199 IPR019775 -
Chy02g02631 493 Gene3D - 453 493 - -
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 203 - -
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 289 IPR001680 GO:0005515
Chy02g02631 493 SUPERFAMILY WD40 repeat-like 8 338 IPR036322 GO:0005515
Chy02g02631 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 207 IPR001680 GO:0005515
Chy02g02631 493 Gene3D - 105 362 IPR015943 GO:0005515
Chy02g02631 493 MobiDBLite consensus disorder prediction 414 439 - -
Chy02g02631 493 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 10 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02631 - - - csv:101204201 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02631 Chy-Chr2:29407143 Chy12g01297 Chy-Chr12:17422898 3.38E-75 dispersed
Chy12g00046 Chy-Chr12:411019 Chy02g02631 Chy-Chr2:29407143 5.20E-15 transposed
Chy10g00828 Chy-Chr10:14229026 Chy02g02631 Chy-Chr2:29407143 5.21E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014149 0 2 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 23