Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02633 ATGTCCCCGAACGAGATAGCAAACGAAGCGATTAAGCACGCTCTCAGAGCCCTCCGGCAACGCCATCTCCTTGAAGAAGGTGCGCATGCTCCTGCTTTTCTCGCTCTTTCTCGCCCCATCATAACCCAGAGTTCGGAATGGAAAGAGAAAGCGGAGAAGTTGGAATTGGAGCTTCAGCAGTGTTACAAGGCTCAATCACGATTATCTGAGCAACTTGTGGTTGAAGTTGCTGAGGTTCGAACTTCTAAATCTTTGATTGGGGAGAAAGAGGCTGTGATTGATAATTTGGAGCAGGAATTAAGTCGAGCCAGGGATGAATGCTCTCAGTTGAAGGCAGACTTAGAGATCAAACTTAAAGCTCTGGAACTGGCTTTATGTGAGAATCAAGAAATTAAAACACAGCTTGAAGCAATGACAGTTAAAGCTAAGAATGCAGAGGCTGAAAATAAAATGTTGGTTGACCGGTGGATGCTTCAAAAGATGCAGGACGCAGAACGTCTCAATGAGGCAAATGCACTCTATGAGGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAGGTTGATGGCGTGGTTCGCCAAAGCGAAGAGGGTGCTGAATTCTTTGTGGAATCCACTGTACCCTCAGTGTGCAAGCATAGGATCCGTGGCCATGAAGGGGGATGTGGTACTATATTGTTTGAAAATAACTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGTACAGTCAAATTGTGGGATACAAATACTGGATCATTAAGTTCCACTCTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCCATTACCCATGATAATAGATCTGTTATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACATCAGTTCTGGAAGGGTGCGCCATACGTTGACTGGTCACTCAGACAAAGTATGTGCTGTAGATGTAAGCAAAGTTTCTAGCCGCTATGTTGTGAGTGCTGCATATGATCGCACCATTAAAATTTGGGACCTACAGAAGGGTTACTGCACTAAGACCTTCATTTTTGCCAGCAATTGTAATGCAGTTCGCTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACTGGAAAATTGATTGGCGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACAATATTGACTAGTGGGAGAGATAACTTGCATAATTTATTTGATATCCGATCTTTGGAAGTCTGTGGGACATTAAGGGCATCTGGGAACAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGTCCAGACGACAACTACGTTGCAGCTGGTTCTGCAGATGGGTCAGTTCATGTGTGGTCAATATCAAAACACGATATCGTTAGAACTCTGAAAGAGAGCACTGCATCTGTTCTATGTTGTTCATGGAGTGGGCTTGGAAAACCGCTTGCGTCTGCGGACAGAAATGGTATAATATTTACATGGAACTGA 1530 44.58 MSPNEIANEAIKHALRALRQRHLLEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEVRTSKSLIGEKEAVIDNLEQELSRARDECSQLKADLEIKLKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFENNSGKLISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGRVRHTLTGHSDKVCAVDVSKVSSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVRFSMDGQTICSGHVDGNLRLWDIQTGKLIGEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDIVRTLKESTASVLCCSWSGLGKPLASADRNGIIFTWN* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29423404 29425844 + Chy2G049000.1 Chy02g02633 222081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02633 509 Coils Coil 86 124 - -
Chy02g02633 509 Coils Coil 44 71 - -
Chy02g02633 509 SUPERFAMILY WD40 repeat-like 213 509 IPR036322 GO:0005515
Chy02g02633 509 Gene3D - 352 509 IPR015943 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Chy02g02633 509 Coils Coil 164 184 - -
Chy02g02633 509 Gene3D - 80 351 IPR015943 GO:0005515
Chy02g02633 509 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Chy02g02633 509 Pfam WD domain, G-beta repeat 384 415 IPR001680 GO:0005515
Chy02g02633 509 Pfam WD domain, G-beta repeat 446 467 IPR001680 GO:0005515
Chy02g02633 509 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Chy02g02633 509 Pfam WD domain, G-beta repeat 344 379 IPR001680 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 424 IPR001680 GO:0005515
Chy02g02633 509 Coils Coil 128 155 - -
Chy02g02633 509 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 347 IPR001680 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 342 - -
Chy02g02633 509 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 5 508 - -
Chy02g02633 509 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Chy02g02633 509 Pfam Autophagy protein 16 (ATG16) 43 168 IPR013923 -
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Chy02g02633 509 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Chy02g02633 509 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Chy02g02633 509 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Chy02g02633 509 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Chy02g02633 509 CDD WD40 217 509 - -
Chy02g02633 509 PANTHER AUTOPHAGY PROTEIN 16-LIKE 5 508 IPR045160 GO:0000045
Chy02g02633 509 SMART WD40_4 214 253 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 298 338 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 382 421 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 341 379 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 470 509 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 256 295 IPR001680 GO:0005515
Chy02g02633 509 SMART WD40_4 424 467 IPR001680 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 476 IPR001680 GO:0005515
Chy02g02633 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02633 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 961.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01020 Chy-Chr2:6887330 Chy02g02633 Chy-Chr2:29423404 3.71E-29 dispersed
Chy02g02633 Chy-Chr2:29423404 Chy10g00767 Chy-Chr10:13777799 1.54E-28 dispersed
Chy04g01429 Chy-Chr4:20935652 Chy02g02633 Chy-Chr2:29423404 5.27E-15 dispersed
Chy02g02633 Chy-Chr2:29423404 Chy12g00405 Chy-Chr12:4719835 1.03E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32