Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02647 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTACGATTGTTTTGGTGCTCCACTTCAAGTTTTTTCTCTATCAACATTGTCTCGGTCTGAAAGGAAGGATTTAGAGTTAAGGTTAAAGTTAGAACTTGAGCAGGTCCGACTGCTGCAAAAAAGAGCTTCTAATGTTAGTTCAAATTTTGCCGTCTCATCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTAAATAGGTTGAATGAGGCATTGGTTCCTCCTGCTAAAAAGCTAGTGCCCTCTGGACGCAATGGCCCTTCTGCTAAAAGGAGTTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCATCCTCAACAGCGTCATTGAAACAATGCGAACAGCTGCTGCAACGCTTGATGTCACATACATTTGGTTGGGTGTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTTATAAAGCATCCGATGGATCTGGGCACTGTGAAGTCTAAGCTTACTGCAGGAGAATACACACATCCATTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCAGCTAATGACGTCCATACCATGGCTAAAACACTAAATAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAATTCCCTACGACAACTGAAGAACAACGTCAAGTACCTTCAGCCACGACTGTTCCCAAGGAAGCTGAAAGTGCTCTGCCAGTGCCACCTCCAAAAAAGACAAAATTCCCTACAAATGACCCTGATGTTCAGCCAAGCAGTGTGGTAAAAGTCATGACTGACCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTACCTGAAAGCATCATTAATTTCCTAAAGGAGCATAGTTCTAATTCTCAAGCTGGTGAGGATGAGATTGAAATTGACATCGATGCTCTTAGTGATGATACCTTGTTTGCCTTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAATGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAATGAATCAGGATTTAGCAATTCATCAATGCCAGCAAGTAAAGGAAACGATCCCATTGATGAGGATGTTGACATTCTGGGTGGAAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAATGATGCAGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCACAGAAAGCTTATCGGGAAGTGAATCTAATGCTGGCAAAGCTTTAGAGAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCAGAAGCAATGCGAGCTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGAGATTGGTCTAGTTGATCAAATCGCAGAGGCCAATACGAACACTATTGAGCCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTGTTAAGGAACCGTTTCGCTGACACTATATTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGAGAATGGAGAGGGAAGAACTCGAAAGACAGCAAAGAGAAGAAAAAGCACGGTTGCAAGCGGAGGCAAAAGCTGCAGAGGATGCTCGGAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCCCGTCAAGCCTTACTTAAGATGGAAAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCCAACGACGAGCTTCTACCAAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAGAATGGATTTGGCAGTTTCAAACTTCAAGGTAGTAACCCCTTGGAACAACTTGGTCTGTACATGAAGGTGGATGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGGCAGCAAATGATGTTGAAGAAGGGGAAATCGATTAG 2328 43.21 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGYDCFGAPLQVFSLSTLSRSERKDLELRLKLELEQVRLLQKRASNVSSNFAVSSSSNIQSSSDQHRGAPPETLNRLNEALVPPAKKLVPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKLTAGEYTHPLDFAADVRLTFSNAMTYNPPANDVHTMAKTLNKFFEVRWKTIEKKFPTTTEEQRQVPSATTVPKEAESALPVPPPKKTKFPTNDPDVQPSSVVKVMTDQEKHKLSVELEALLGELPESIINFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKCTKAEPCVVELHNESGFSNSSMPASKGNDPIDEDVDILGGNDPPVSSYPPIEIENDAVRRDSKCSNSSSSSSESDSGTESLSGSESNAGKALESNVAPKEILCSETNVDQKQCELGDLEIGNYEENEIGLVDQIAEANTNTIEPDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDELLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEEESEPPQSVNKAANDVEEGEID* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29516699 29522303 - Chy2G049140.1 Chy02g02647 222095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02647 775 MobiDBLite consensus disorder prediction 309 352 - -
Chy02g02647 775 CDD Bromo_plant1 205 302 IPR037377 -
Chy02g02647 775 Gene3D - 186 321 IPR036427 GO:0005515
Chy02g02647 775 MobiDBLite consensus disorder prediction 166 193 - -
Chy02g02647 775 PRINTS Bromodomain signature 219 232 IPR001487 GO:0005515
Chy02g02647 775 PRINTS Bromodomain signature 269 288 IPR001487 GO:0005515
Chy02g02647 775 PRINTS Bromodomain signature 235 251 IPR001487 GO:0005515
Chy02g02647 775 PRINTS Bromodomain signature 251 269 IPR001487 GO:0005515
Chy02g02647 775 SUPERFAMILY Bromodomain 184 310 IPR036427 GO:0005515
Chy02g02647 775 Coils Coil 106 126 - -
Chy02g02647 775 MobiDBLite consensus disorder prediction 444 521 - -
Chy02g02647 775 MobiDBLite consensus disorder prediction 711 736 - -
Chy02g02647 775 MobiDBLite consensus disorder prediction 490 519 - -
Chy02g02647 775 Gene3D - 354 430 IPR038336 -
Chy02g02647 775 MobiDBLite consensus disorder prediction 708 775 - -
Chy02g02647 775 PANTHER TRANSCRIPTION FACTOR GTE10 25 759 - -
Chy02g02647 775 SMART bromo_6 197 307 IPR001487 GO:0005515
Chy02g02647 775 Coils Coil 627 675 - -
Chy02g02647 775 Pfam Bromodomain extra-terminal - transcription regulation 359 420 IPR027353 -
Chy02g02647 775 ProSiteProfiles Bromodomain profile. 216 288 IPR001487 GO:0005515
Chy02g02647 775 Pfam Bromodomain 208 292 IPR001487 GO:0005515
Chy02g02647 775 MobiDBLite consensus disorder prediction 614 674 - -
Chy02g02647 775 PANTHER TRANSCRIPTION FACTOR GTE8 25 759 - -
Chy02g02647 775 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02647 - - - csv:101217420 1298.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00594 Chy-Chr1:4253076 Chy02g02647 Chy-Chr2:29516699 4.34E-13 dispersed
Chy10g00735 Chy-Chr10:13600947 Chy02g02647 Chy-Chr2:29516699 1.40E-11 dispersed
Chy01g00168 Chy-Chr1:1157499 Chy02g02647 Chy-Chr2:29516699 4.88E-46 transposed
Chy02g00191 Chy-Chr2:1316155 Chy02g02647 Chy-Chr2:29516699 1.93E-14 transposed
Chy05g00504 Chy-Chr5:5516819 Chy02g02647 Chy-Chr2:29516699 8.15E-46 transposed
Chy07g00961 Chy-Chr7:14259612 Chy02g02647 Chy-Chr2:29516699 6.41E-47 transposed
Chy07g01758 Chy-Chr7:21198059 Chy02g02647 Chy-Chr2:29516699 4.75E-50 transposed
Chy09g00704 Chy-Chr9:9474995 Chy02g02647 Chy-Chr2:29516699 8.92E-27 transposed
Chy11g01424 Chy-Chr11:20959793 Chy02g02647 Chy-Chr2:29516699 3.70E-44 transposed
Chy02g02647 Chy-Chr2:29516699 Chy06g01509 Chy-Chr6:16534192 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47