Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02650 ATGTCCTTCGGTGCCTTCTCTCATACTCATCAGAACCAGCGGAAGTGTAGGAAGTGGAGCTCTCGAGTCAAGATTTCAGACATGGCGGCAACGAATGAAGCCAAATGTAAAAATAATGCTGTTGTGACTGATTTTCTCCAGTTCTTGAACGCTTCCCCAACTGCTTTCCATGCCGTCGTGGAGGCAAAGAAGCGTTTGATAAGCGTTGGATATGACCAAGTATCTGAAAAAGCGAACTGGAAATTAGAAGCCGGGAAGAAGTACTTCTTTACCAGAAACCATTCAACCATTGTTGCTTTTGCGATCGGCAAAAAATATGTTGGTGGGAATGGATTTCATATTGTTGGTGCTCATACTGACAGCCCTTGTGTGAAACTGAAACCGGTGTCCAAGGTAACAAAAGGAGGATACCTGGAAGTTGGTGTTCAAACGTATGGGGGTGGGTTGTGGCACACATGGTTTGATCGTGACTTAACAATTGCAGGAAGGGTGATTATAAAGGAAGAAAAAAGTGGTTCATTGTCATATATTCATCGACTTGTACGAGTTGAGGATCCCATAATGAGAATTCCAACACTAGCAATTCACTTGGACAGGGGCACGGATGGGTTTAAGGTGAACACACAGAGTCATCTTCTCCCAGTTTTGGCAACAAGTATTAAGGGGGAATTGAACAAAGCTGTTACCAAGAATGATGTACAAAATGATGGAGAGAAAACAGATCCTAAGTCAAGTCCCAATAGCTCAAAGCATCACACGCTTCTATTACAGCTACTTGCCGATCAACTCAACTGTGAACCAGATGACATTTGTGATTTTGAATTGCAAGCTTGTGACACACAACCTAGTCTGGTTGGTGGTGCACAGAAAGAATTCATTTTCTCTGGAAGGCTTGATAATTTATGCATGTCATTTTGCTCTTTGAAGGCGCTGATTGACAGTACATCTTTTGAAACTAGCCTTGAGAATGAACCTGGTGTTAGAATGGTGGCCTTGTTCGACCATGAAGAAGTTGGATCTAATTCAGCCCAGGGAGCTGGTTCCCCAGTAATGCTTAATGCTTTATCACGAATCACAAACTCCTTCAGCTCTGACTCTTCGCTGGTTGAGAAAGCTATCCAGAGAAGTTTCCTTGTCTCGGCTGACATGGCACATGCATTACATCCTAATTATACGGATAAGCATGAAGAAAATCATCAGCCCAAGTTGCATGGAGGATTGGTTATCAAGAACAATGCAAATCAGCGATATGCAACCAATGCAGTCACATCATTCATATTCAGGGAATTGGCTGTGAATCATAACCTTCCTGTTCAGGATTTTGTGGTCCGCAATGACATGAGTTGCGGTTCAACCATTGGCCCCATTCTTGCCAGTGGCGTAGGTATACGAACAGTAGATGTTGGAGCACCACAGCTATCAATGCACAGTATTCGGGAAATGTGTGCTACAGATGATGTCAATCACTCCTATGAGCATTTTAAGGCCTATTACGAAGAGTTCTCTAGTCTTGACGAGAAGCTCACGGTCGATATGTAG 1539 43.27 MSFGAFSHTHQNQRKCRKWSSRVKISDMAATNEAKCKNNAVVTDFLQFLNASPTAFHAVVEAKKRLISVGYDQVSEKANWKLEAGKKYFFTRNHSTIVAFAIGKKYVGGNGFHIVGAHTDSPCVKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTIAGRVIIKEEKSGSLSYIHRLVRVEDPIMRIPTLAIHLDRGTDGFKVNTQSHLLPVLATSIKGELNKAVTKNDVQNDGEKTDPKSSPNSSKHHTLLLQLLADQLNCEPDDICDFELQACDTQPSLVGGAQKEFIFSGRLDNLCMSFCSLKALIDSTSFETSLENEPGVRMVALFDHEEVGSNSAQGAGSPVMLNALSRITNSFSSDSSLVEKAIQRSFLVSADMAHALHPNYTDKHEENHQPKLHGGLVIKNNANQRYATNAVTSFIFRELAVNHNLPVQDFVVRNDMSCGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCATDDVNHSYEHFKAYYEEFSSLDEKLTVDM* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29536166 29540353 + Chy2G049170.1 Chy02g02650 222098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02650 512 CDD M18_DAP 44 499 - -
Chy02g02650 512 Pfam Aminopeptidase I zinc metalloprotease (M18) 48 498 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 SUPERFAMILY Aminopeptidase/glucanase lid domain 125 276 - -
Chy02g02650 512 Gene3D Aminopeptidase i, Domain 2 123 282 IPR023358 GO:0004177
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 145 165 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 112 128 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 376 392 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 184 201 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 333 351 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 465 480 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 PANTHER ASPARTYL AMINOPEPTIDASE 36 511 - -
Chy02g02650 512 MobiDBLite consensus disorder prediction 232 246 - -
Chy02g02650 512 PANTHER ASPARTYL AMINOPEPTIDASE 36 511 IPR001948 GO:0004177|GO:0006508|GO:0008270
Chy02g02650 512 SUPERFAMILY Zn-dependent exopeptidases 40 499 - -
Chy02g02650 512 MobiDBLite consensus disorder prediction 229 249 - -
Chy02g02650 512 Gene3D Zn peptidases 44 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02650 K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21] - csv:101216468 986.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02650 Chy-Chr2:29536166 Chy10g01249 Chy-Chr10:17053571 0 dispersed
Chy02g02649 Chy-Chr2:29532156 Chy02g02650 Chy-Chr2:29536166 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47