Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02654 ATGCAATCAGAATTTTTGGGCAGTTCTTCCATTCTCGTTTCGCCACATTCAGCTCCTTACAAGCAGAGGATGGCGTCCTTTGGCGCTCTTTCACTTTGTCCTTGCAGCCCACTTTTACGCCCTCATCACCCAGTTCGTACTATTTATTGTTGCCGTGGATCTCCTACAGTTTTAGGCAAAAATGTTTCTAAAGTACCCCGAAAAAGACCGGGGAGATTGGAAGGTGCTAAAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAGTTTTATGAAGGTTCGGATGGTCCACCTCTCCGAGTTCTTCCGATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATTCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTTATCAAGAGATGGAGTCACAAAATTGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCAGCTTTGGATTCTCATACACCAATATATGCATCTTCCTTTACAGTGGAGCTTATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTGTTTAAGATGAGAAAGAAATTTACAGCTGGTCCATTTGAAATAGAGCCAATTAGGGTTACTCATTCCATTCCCGATTGTTGTGGATTAGTTCTTCGATGTACTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAATCGCCATTGGATGGTAAAGTATTTGATCGAGAAACTTTGGAACAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACGAACGTACTATCTCCTGGAAGAACCATTAGTGAGTCTGTGGTGGCAGATGCACTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCGGATTTAACTGGCAGAAAGTTGGTATTTGTTGGTATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATTGATCCATCAACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATCTATTAATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCGCTAAATCTTGCATCTTACGGAAGTAGTCACTCTCTTAAACTGAGCAAGGAAGACATGATTTTGTATTCGGCCAAGGTGATACCTGGTAACGAATCCAGAGTGATGAAAATGTTGAACCGTATATCAGAGATCGGATCAAATATAATAATGGGCAAGAACGAGTTGCTGCACACATCTGGTCATGGATACCGTGGAGAATTAGAGGAAGTACTTCAAATTGTAAAGCCGCAACATTTTTTACCCATTCATGGGGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGTCGGTCTACTGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTTGGAGTTTCTCATCTAAGAAACAGAAGAGTTTTATCCAACGGCTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACAGATGGCATTATAGTAGTCAGTATGGAAATTTTGCGACCTCAAAGTGTAGATGGTTTAAATGGGACTGGCATCAAAGGAAAGCTAAGGATCACTACTCGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCCGCTCATGCTGCACTTTCAAGCTGCCCCCTGAATTGTCCTCTAGCTCACATGGAAAGAACTGTGGCTGAGCTTCTTAGGAAGATGGTTAGAAAGTACAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAGCCCTGGAGGAGTTCTAGCCGAAGAGCTTGGAGCAAGGCTTGCAGGCAAGTCCAGTAGTGGATTTGGGATGTCAGCATCGCGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACTTAAACAGCATAAGACCAGATGGAATTAACGATTTGCATTCTGAGGATAACTCAAGTCAGGAGTCTCAAGGTTATCATTTATCTGAAAGACTACTCCCTGAAGAGGACTATGATACCACGAACTTGAACTTGACAGAGACACAATCCATTGATAACGAAGGTTTGGAGGATTTCTGGAAACCATTTATCACGCCATCCTCTCCTGCCAACGAATTGGCGAAGGATAACGAAGGTTCTGTTCAACATTCAGAAAGTACGTTGGAGATTTCAAACGAACGTGAAGAAGTCAGTGATGACAAGTCACTGAAAACATCAAATTCTGATGTGAACTCTTCAAAGCCTGTGAAACGCAATAAATGGAAACCCGAGGAAATCAAGAAACTTATTAAATTGCGGGGGGAATTGCATGACAGGTTTCAAGTGGCCAGGGGACGAATGGCATTGTGGGAAGAGATATCCAATGGTATGTCGGCTGATGGTATTAATCGGAGTGCTGGACAGTGCAAATCTCTCTGGGCATCTCTGGTTCAGAAATTTGAGATCGTTAAGAGTGGTGCACAGTACGATCGTGTATTGAGTTACTTCGACGAAGATGGAGACGGGAAGATATCGCCGTCGGAGCTGAGGAATCGGCTGGGATTGATTGGTGGAGAGCTGCAGCAGGCGGAGGCTGAGGCGGCGGTGGAATCGCTGGACTCGGACGGGGATGGTTTGCTGTGTGTGGGGGATATCGAACGGTTACTGGAGGTTGGGGAGGAGGAGAAGTTGAAGGATTTGAAGGAGGCGTTTGCTCTGTATGATAGTGAAGGTTGCGGGTTCATAACTCCGAAGAATTTGAAGAAAATGCTGAGGAAATTAGGGGAGAGGAAATCGACGGAGGAGTGTAAAATGATGATTCGTCGCTTTGATTTGAACGGTGACGGTTTGATTAGCTTTGAGGAGTTTCAGATCATGATGGCTTAG 3054 44.07 MQSEFLGSSSILVSPHSAPYKQRMASFGALSLCPCSPLLRPHHPVRTIYCCRGSPTVLGKNVSKVPRKRPGRLEGAKRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMRKKFTAGPFEIEPIRVTHSIPDCCGLVLRCTDGTILHTGDWKIDESPLDGKVFDRETLEQLSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSVDGLNGTGIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPLNCPLAHMERTVAELLRKMVRKYSGKRPEVIVMAVESPGGVLAEELGARLAGKSSSGFGMSASRKAVDGQPTKSHLNSIRPDGINDLHSEDNSSQESQGYHLSERLLPEEDYDTTNLNLTETQSIDNEGLEDFWKPFITPSSPANELAKDNEGSVQHSESTLEISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGELHDRFQVARGRMALWEEISNGMSADGINRSAGQCKSLWASLVQKFEIVKSGAQYDRVLSYFDEDGDGKISPSELRNRLGLIGGELQQAEAEAAVESLDSDGDGLLCVGDIERLLEVGEEEKLKDLKEAFALYDSEGCGFITPKNLKKMLRKLGERKSTEECKMMIRRFDLNGDGLISFEEFQIMMA* 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29570673 29585286 + Chy2G049210.1 Chy02g02654 222102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02654 1017 Pfam Myb/SANT-like DNA-binding domain 814 893 IPR044822 -
Chy02g02654 1017 Pfam Beta-lactamase superfamily domain 123 259 IPR001279 -
Chy02g02654 1017 ProSitePatterns EF-hand calcium-binding domain. 893 905 IPR018247 -
Chy02g02654 1017 Gene3D - 817 875 - -
Chy02g02654 1017 ProSiteProfiles Myb-like domain profile. 809 873 IPR001005 -
Chy02g02654 1017 MobiDBLite consensus disorder prediction 755 815 - -
Chy02g02654 1017 Gene3D - 104 516 IPR036866 -
Chy02g02654 1017 MobiDBLite consensus disorder prediction 784 799 - -
Chy02g02654 1017 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 514 IPR036866 -
Chy02g02654 1017 ProSiteProfiles EF-hand calcium-binding domain profile. 987 1017 IPR002048 GO:0005509
Chy02g02654 1017 CDD EFh 955 1017 IPR002048 GO:0005509
Chy02g02654 1017 PANTHER RIBONUCLEASE J 17 894 - -
Chy02g02654 1017 SUPERFAMILY EF-hand 886 1016 IPR011992 -
Chy02g02654 1017 SMART efh_1 955 983 IPR002048 GO:0005509
Chy02g02654 1017 SMART efh_1 991 1017 IPR002048 GO:0005509
Chy02g02654 1017 SMART efh_1 884 912 IPR002048 GO:0005509
Chy02g02654 1017 Gene3D - 944 1017 - -
Chy02g02654 1017 Gene3D - 876 943 - -
Chy02g02654 1017 Pfam EF-hand domain pair 954 1016 IPR002048 GO:0005509
Chy02g02654 1017 MobiDBLite consensus disorder prediction 678 701 - -
Chy02g02654 1017 MobiDBLite consensus disorder prediction 766 783 - -
Chy02g02654 1017 CDD EFh 884 934 IPR002048 GO:0005509
Chy02g02654 1017 CDD RNaseJ_MBL-fold 103 514 - -
Chy02g02654 1017 SMART Lactamase_B_5a 112 309 IPR001279 -
Chy02g02654 1017 Pfam EF hand 888 907 IPR002048 GO:0005509
Chy02g02654 1017 MobiDBLite consensus disorder prediction 676 721 - -
Chy02g02654 1017 CDD GT1 815 880 - -
Chy02g02654 1017 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 454 494 IPR011108 -
Chy02g02654 1017 ProSitePatterns EF-hand calcium-binding domain. 1000 1012 IPR018247 -
Chy02g02654 1017 Gene3D - 301 451 IPR042173 -
Chy02g02654 1017 ProSiteProfiles EF-hand calcium-binding domain profile. 951 986 IPR002048 GO:0005509
Chy02g02654 1017 ProSiteProfiles EF-hand calcium-binding domain profile. 880 915 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02654 - - - csv:101215740 1700.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02654 Chy-Chr2:29570673 Chy09g00827 Chy-Chr9:10974788 3.12E-25 dispersed
Chy04g00539 Chy-Chr4:5426677 Chy02g02654 Chy-Chr2:29570673 4.82E-26 transposed
Chy09g01362 Chy-Chr9:15463264 Chy02g02654 Chy-Chr2:29570673 1.10E-10 transposed
Chy11g00062 Chy-Chr11:652966 Chy02g02654 Chy-Chr2:29570673 1.05E-08 transposed
Chy02g02654 Chy-Chr2:29570673 Chy06g01517 Chy-Chr6:16623029 3.69E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17627 PF12706 Lactamase_B_2 4.00E-11 CL0381 Chy TF