Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02666 ATGTTCTGGTCCTTTCAACGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCTGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGCGGTATGGTTGGAGCTACTGCTAGTGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCGGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCTCAGCCGCCATCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGTGGGCAGGGTAATCTTGATGGTCAGAGCTAA 555 51.17 MFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQS* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29657404 29661824 - Chy2G049330.1 Chy02g02666 222114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02666 184 Gene3D Histone, subunit A 1 98 IPR009072 GO:0046982
Chy02g02666 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 184 - -
Chy02g02666 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
Chy02g02666 184 SUPERFAMILY Histone-fold 7 92 IPR009072 GO:0046982
Chy02g02666 184 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02666 - - - csv:101213576 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02666 Chy-Chr2:29657404 Chy08g01003 Chy-Chr8:17300087 1.30E-70 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.9 4.6e-87 317.8
Chy08g01003 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Chy01g00305 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.5e-53 204.1
Chy08g01003 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Chy01g00305 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.5e-49 191.0
Chy02g02666 . 2 97 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.3 1.7e-41 166.4
Chy08g01003 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Chy01g00305 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Chy02g02666 . 2 157 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 4.2e-50 194.9
Chy02g02666 . 8 156 CCAAT-HAP5 Transcription Factor Family AT5G50480 56.3 1.7e-37 152.9
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.7 3.8e-79 291.6
Chy08g01003 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Chy01g00305 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Chy01g00305 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Chy08g01003 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Chy02g02666 . 1 122 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.4 4.3e-49 191.4
Chy03g00679 . 62 196 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 1.4e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17628 PF00808 CBFD_NFYB_HMF 1.50E-17 CL0012 Chy TF